View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_19 (Length: 413)
Name: NF6900_low_19
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 28003924 - 28003540
Alignment:
| Q |
19 |
attttactcacattaaatagagctgcaactgatgccaccattgatgactctagtttgcctttaagattggcacaagtatatgaagaagcgaattctttct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
28003924 |
attttactcacattaaatagagctgcaactgatgccaccattgatgactctagtttgcctttaagattggcacaagtatatttagaagtgaattctttct |
28003825 |
T |
|
| Q |
119 |
tagttaaatccgaaaattgattcagacccaactcataagtttcatttccagcacggttgaaattctcgatgtactccaaattctttgcaaaaatcttaaa |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28003824 |
tagttaaatccaaaaattgattcagacccaactcataagtttcatttccagcacggttgaaattctcgatgtactccaaattctttgcaaaaatcttaaa |
28003725 |
T |
|
| Q |
219 |
ccgtttctccttctcaacatcatctgcataagtgcgtccgaaatctttcatccattgctcatgtgttttagcagcaatagatgattctggcaatgttctc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28003724 |
ccgtttctccttctcaacatcatctgcataagtgcgtccgaaatctttcatccattgttcatgtgttttagcagcaatagatgattctagcaatgttctc |
28003625 |
T |
|
| Q |
319 |
gacattgctggatatacacatgtccaaaatatgaagaaaacagctatcgtaagattcttcatttctaagatagttatcacaggtt |
403 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28003624 |
gacattgctggatatgaacatgtccaaaatatgaagaaaacagctatcgtaagattcttcatttctaagatagttatcactggtt |
28003540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 55 - 365
Target Start/End: Original strand, 28284757 - 28285070
Alignment:
| Q |
55 |
accattgatgactctagtttgcctttaagattggcacaagtatatgaagaagcgaattctttcttagttaaatccgaaaattgattcagacccaactcat |
154 |
Q |
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||||| ||||||||||||| | |||||||| ||||| ||||| ||| ||| || |||| || |||||||| || ||||||||||||||||||| || |
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| T |
28284757 |
accatagatgactctagttctcttttaagatcaacacaattatataaagcagcaaactcttcatttgttaaatcagagaattgattcagacccaacttat |
28284856 |
T |
|
| Q |
155 |
aagtttcatttccagcacggttgaaattctcgatgtactccaaattctttgcaaaaatcttaaaccgtttctccttctcaacatcatctgcataagtgcg |
254 |
Q |
| |
|
|||| | |||||||||||||| |||||||| ||||| || ||||||| |||||||||||| || ||||||||||||||| |||||||||||||| |||| |
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| T |
28284857 |
aagtctgttttccagcacggttaaaattctctatgtattctaaattctctgcaaaaatcttgaatcgtttctccttctcagcatcatctgcataattgcg |
28284956 |
T |
|
| Q |
255 |
tccgaaatctttcatccattgctcatgt---gttttagcagcaatagatgattctggcaatgttctcgacattgctggatatacacatgtccaaaatatg |
351 |
Q |
| |
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|||| ||||||||||||||||| | | |||| || ||||| |||||||| || | |||||||||| | | || || |||||||||||||| || |
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| T |
28284957 |
ctcgaattctttcatccattgctcgtatctcgtttcagtagcaactgatgattccaacactattctcgacatggtttgaaatgcacatgtccaaaatgtg |
28285056 |
T |
|
| Q |
352 |
aagaaaacagctat |
365 |
Q |
| |
|
||||||| |||||| |
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| T |
28285057 |
aagaaaatagctat |
28285070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 28418323 - 28418481
Alignment:
| Q |
120 |
agttaaatccgaaaattgattcagacccaactcataagtttcatttccagcacggttgaaattctcgatgtactccaaattctttgcaaaaatcttaaac |
219 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||| ||| |
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| T |
28418323 |
agttaaatctgagtattgattcagacccaactcataagtcgcatttccatcacggttgaaattctctatgtattccaatttctctgcaaaaatcttgaac |
28418422 |
T |
|
| Q |
220 |
cgtttctccttctcaacatcatctgcataagtgcgtccgaaatctttcatccattgctc |
278 |
Q |
| |
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||||| | ||||||| |||||||||||||||| || ||||| ||||||||||||||||| |
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|
| T |
28418423 |
cgtttattcttctcagcatcatctgcataagtacgcccgaattctttcatccattgctc |
28418481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 121 - 358
Target Start/End: Complemental strand, 27348627 - 27348387
Alignment:
| Q |
121 |
gttaaatccgaaaattgattcagacccaactcataagtttcatttccagcacggttgaaattctcgatgtactccaaattctttgcaaaaatcttaaacc |
220 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| ||||| ||| |||||||||| |||| ||||| || || |||| |||||||| || |||| |
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| T |
27348627 |
gttaaatctgaaaattgattcaaacccaactcataagtctcattcccatcacggttgaacctctctatgtattctaatttctccgcaaaaattttgaacc |
27348528 |
T |
|
| Q |
221 |
gtttctccttctcaacatcatctgcataagtgcgtccgaaatctttcatccattgctcatgt---gttttagcagcaatagatgattctggcaatgttct |
317 |
Q |
| |
|
|||||||||||||| |||| ||| ||||| |||| || || ||||||||||||||||| ||| |||| |||| || |||||||||| || ||| | |
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| T |
27348527 |
gtttctccttctcagcatcgtcttcataactgcgcccaaattctttcatccattgctcgtgtctcgtttctgcagtaacagatgattctaacactgtcat |
27348428 |
T |
|
| Q |
318 |
cgacattgctggatatacacatgtccaaaatatgaagaaaa |
358 |
Q |
| |
|
||||| ||| ||||| |||||||||||||| ||||||||| |
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| T |
27348427 |
ggacatagcttgatatgcacatgtccaaaatgtgaagaaaa |
27348387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 365
Target Start/End: Complemental strand, 28406661 - 28406439
Alignment:
| Q |
136 |
tgattcagacccaactcataagtttcatttccagcacggttgaaattctcgatgtactccaaattctttgcaaaaatcttaaaccgtttctccttctcaa |
235 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||||| |||| | || ||||| || | |||||||||||| ||| |||||||||||||| |
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| T |
28406661 |
tgattcagacccaacttataagtctcatttccatcacggttgaacctctctacatattccaatttttctgcaaaaatcttgaactgtttctccttctcag |
28406562 |
T |
|
| Q |
236 |
catcatctgcataagtgcgtccgaaatctttcatccattgctcatg---tgttttagcagcaatagatgattctggcaatgttctcgacattgctggata |
332 |
Q |
| |
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||||| || | ||||||||||||||||||||| || ||||||||||||||||||||||| || ||| |||||||| ||| |||| |
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| T |
28406561 |
catcacacgctt----------gaaatctttcatccattgctcgtgttttgttttagcagcaatagatgatttcaccactgtgctcgacatggctagata |
28406472 |
T |
|
| Q |
333 |
tacacatgtccaaaatatgaagaaaacagctat |
365 |
Q |
| |
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| ||||||| | ||||||||||||| |||||| |
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|
| T |
28406471 |
tgcacatgtggataatatgaagaaaatagctat |
28406439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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