View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_2 (Length: 1150)

Name: NF6900_low_2
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_2
NF6900_low_2
[»] chr8 (2 HSPs)
chr8 (12-340)||(12171101-12171428)
chr8 (12-340)||(12415529-12415856)
[»] chr7 (3 HSPs)
chr7 (765-955)||(223975-224168)
chr7 (641-705)||(224199-224262)
chr7 (621-675)||(5955458-5955512)
[»] chr6 (6 HSPs)
chr6 (765-955)||(24607885-24608073)
chr6 (805-930)||(27576437-27576563)
chr6 (641-705)||(24607794-24607858)
chr6 (641-710)||(27576317-27576386)
chr6 (859-930)||(27534183-27534256)
chr6 (657-710)||(30123656-30123709)
[»] chr3 (7 HSPs)
chr3 (743-955)||(25373083-25373295)
chr3 (819-930)||(11468193-11468306)
chr3 (612-697)||(54575115-54575200)
chr3 (875-930)||(53489418-53489473)
chr3 (621-675)||(53489168-53489222)
chr3 (657-710)||(2614527-2614580)
chr3 (657-710)||(6935608-6935661)
[»] chr5 (4 HSPs)
chr5 (743-863)||(31067553-31067673)
chr5 (641-705)||(31067484-31067548)
chr5 (657-710)||(4931282-4931335)
chr5 (657-710)||(35192773-35192826)
[»] chr2 (4 HSPs)
chr2 (612-707)||(29732789-29732884)
chr2 (730-954)||(29732874-29733090)
chr2 (901-955)||(38563005-38563059)
chr2 (612-697)||(45155721-45155806)
[»] scaffold0090 (1 HSPs)
scaffold0090 (875-955)||(50922-51002)
[»] chr1 (1 HSPs)
chr1 (604-697)||(24988287-24988380)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 12171428 - 12171101
Alignment:
Q  12 atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct 109  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  12171428 atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct 12171329  T
Q  110 tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc 209  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  12171328 tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc 12171229  T
Q  210 cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa 306  Q
    |||||||||||||||||| | | |||||||||   ||| |||| || || |||| ||| |||||||||  |||||||| |||||||||||||||||| ||    
T  12171228 cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa 12171134  T
Q  307 gaaaagtaacaagattcacttagactgagctgga 340  Q
    |||||||| | |||||||||||| ||||||||||    
T  12171133 gaaaagtagc-agattcacttagcctgagctgga 12171101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 12415856 - 12415529
Alignment:
Q  12 atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct 109  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  12415856 atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct 12415757  T
Q  110 tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc 209  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  12415756 tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc 12415657  T
Q  210 cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa 306  Q
    |||||||||||||||||| | | |||||||||   ||| |||| || || |||| ||| |||||||||  |||||||| |||||||||||||||||| ||    
T  12415656 cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa 12415562  T
Q  307 gaaaagtaacaagattcacttagactgagctgga 340  Q
    |||||||| | |||||||||||| ||||||||||    
T  12415561 gaaaagtagc-agattcacttagcctgagctgga 12415529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 765 - 955
Target Start/End: Complemental strand, 224168 - 223975
Alignment:
Q  765 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 864  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  224168 aaccttctacgttgttattttctttagtttatacttgggcaaaaaaataaagtttataatgttatttctagagaatgattataatgttcgttattagaac 224069  T
Q  865 tttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa-taaatttatattgtatttttatttg 955  Q
     ||||||||||||  || ||||||| ||| |||||| ||||||||| |||||||||||||||||||||  ||| |||||||||  |||||||||    
T  224068 attgttattttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaagaaaagttatattgtggttttatttg 223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 641 - 705
Target Start/End: Complemental strand, 224262 - 224199
Alignment:
Q  641 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 705  Q
    |||||||||  |||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  224262 ataagaaatgatcatcattgtaactaacataaaa-taatcaatattgtaatcaataaaattaaca 224199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 621 - 675
Target Start/End: Complemental strand, 5955512 - 5955458
Alignment:
Q  621 tgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaa 675  Q
    ||||||| | ||||| ||| |||||||||  ||||||||||||||||||||||||    
T  5955512 tgaaaatgaaatccgtaaacataagaaatactcatcattgtaactaacacaaaaa 5955458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 1e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 765 - 955
Target Start/End: Original strand, 24607885 - 24608073
Alignment:
Q  765 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 864  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  24607885 aaccttctacgttgttattttctttagtttatactttggcaaaaaaataaagtttataatgttatttttagagaatgattataatgttcgttattagaac 24607984  T
Q  865 tttgttattttatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 955  Q
     ||||  || || || ||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  24607985 attgt--ttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaaaaaagttatattttggttttatttg 24608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 805 - 930
Target Start/End: Original strand, 27576437 - 27576563
Alignment:
Q  805 aaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaa 902  Q
    |||| |||||||||||||||||||||| || | | |||||||||||||| ||| |||| ||||||||||||||  || |||||||  || |||| |||||    
T  27576437 aaaaaaataaagtttataatgtttttt-tagagattgattataatgttctttactagagctttgttattttatacgaaaagtatggacaaaaaattagaa 27576535  T
Q  903 gaagtgatctaacaaaaataagaagaaa 930  Q
    ||| || |||||||||||||||||||||    
T  27576536 gaaatgctctaacaaaaataagaagaaa 27576563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 641 - 705
Target Start/End: Original strand, 24607794 - 24607858
Alignment:
Q  641 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 705  Q
    ||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  24607794 ataagaaatggtcatcattgtaactaatacggaaatgatcaatattgtaatcaataaaattaaca 24607858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 641 - 710
Target Start/End: Original strand, 27576317 - 27576386
Alignment:
Q  641 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 710  Q
    ||||||||||||||||||||||||||| |||   | ||||||||| ||||||||||||||||||||||||    
T  27576317 ataagaaattgtcatcattgtaactaatacatggaggatcaatatagtaatcaataaaattaacatacaa 27576386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 859 - 930
Target Start/End: Original strand, 27534183 - 27534256
Alignment:
Q  859 tagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 930  Q
    |||| ||||||||||||||  || |||||||  || |||| ||||||||||| |||||||||||||||||||||    
T  27534183 tagagctttgttattttatacgaaaagtatggacaaaaaattagaagaagtgctctaacaaaaataagaagaaa 27534256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 710
Target Start/End: Original strand, 30123656 - 30123709
Alignment:
Q  657 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 710  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  30123656 attgtaactaacacagaaaagatcaatattctaatcaataatataaaaatacaa 30123709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 1e-41; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 743 - 955
Target Start/End: Original strand, 25373083 - 25373295
Alignment:
Q  743 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 842  Q
    |||| ||| |||||||| | | |||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||| | |||||| | |||||    
T  25373083 attttaaaggaatatctttatcaaccttctacgttgttattttctttagtttatacttaggaaaaa-aataaagtttataatgctatttctagagaatga 25373181  T
Q  843 ttataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttata 940  Q
    |||||||||| ||||||||||| ||||||||||||  || ||||||| ||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||    
T  25373182 ttataatgttagttattagaacattgttattttataagacaagtatgggcaaaaaacttgaagaagtgctctaataaaaataagaagaaa-aaagttata 25373280  T
Q  941 ttgtatttttatttg 955  Q
    ||||  |||||||||    
T  25373281 ttgtggttttatttg 25373295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 819 - 930
Target Start/End: Complemental strand, 11468306 - 11468193
Alignment:
Q  819 tataatgttttttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaaca 916  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||  || |||||||||  ||| |||||| ||||||||| |||||||    
T  11468306 tataatgttatttctagagaatgattataatgttcgttattagaacattgttatttgatacgataagtattggcaaaaaacttgaagaagtgctctaaca 11468207  T
Q  917 aaaataagaagaaa 930  Q
    ||||||||||||||    
T  11468206 aaaataagaagaaa 11468193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 612 - 697
Target Start/End: Original strand, 54575115 - 54575200
Alignment:
Q  612 tattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 697  Q
    |||| ||| ||||||| | ||||| ||| |||||||||| ||||||||||||||||||||||||  ||| ||||| |||| |||||    
T  54575115 tatttaaattgaaaatgaaatccgtaaacataagaaattatcatcattgtaactaacacaaaaaatatccatattctaataaataa 54575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 875 - 930
Target Start/End: Original strand, 53489418 - 53489473
Alignment:
Q  875 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 930  Q
    |||||||||||||||   |||| || |||||||| |||||||||||||||||||||    
T  53489418 tatgataagtatgaggcaaaaattataagaagtgctctaacaaaaataagaagaaa 53489473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 621 - 675
Target Start/End: Original strand, 53489168 - 53489222
Alignment:
Q  621 tgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaa 675  Q
    ||||||||||||||| ||| |||| |||  ||||| |||||||||||||||||||    
T  53489168 tgaaaataagatccgtaaagataaaaaaaagtcattattgtaactaacacaaaaa 53489222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 710
Target Start/End: Complemental strand, 2614580 - 2614527
Alignment:
Q  657 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 710  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||| || ||||||    
T  2614580 attgtaactatcacaaaaaatatcaatattttaatcaataaaataaaaatacaa 2614527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 710
Target Start/End: Original strand, 6935608 - 6935661
Alignment:
Q  657 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 710  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  6935608 attgtaactaacacataaaagatcaatattctaatcaataacataaaaatacaa 6935661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 743 - 863
Target Start/End: Original strand, 31067553 - 31067673
Alignment:
Q  743 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 842  Q
    |||||||| |||||||| | | ||| ||||  |||||||||||||||| |||||||| || ||||| |||||||||||||||||| ||| || | |||||    
T  31067553 atttcaaaggaatatctttatcaactttctaagttgttattttctttagtttatacttaggcaaaaaaataaagtttataatgttatttttagagaatga 31067652  T
Q  843 ttataatgttcgttattagaa 863  Q
    |||||||||||||||||||||    
T  31067653 ttataatgttcgttattagaa 31067673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 641 - 705
Target Start/End: Original strand, 31067484 - 31067548
Alignment:
Q  641 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 705  Q
    |||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  31067484 ataaaaaatggtcatcattataactaacacagaaatgatcaatattgtaatcaatacaattaaca 31067548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 710
Target Start/End: Original strand, 4931282 - 4931335
Alignment:
Q  657 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 710  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||| || ||||||    
T  4931282 attgtaattaacacataaaagatcaatattctaatcaataaaataaaaatacaa 4931335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 710
Target Start/End: Complemental strand, 35192826 - 35192773
Alignment:
Q  657 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 710  Q
    |||||||||||||||||||  ||||||||| |||||||||| || || ||||||    
T  35192826 attgtaactaacacaaaaaatatcaatattctaatcaataatataaaaatacaa 35192773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 612 - 707
Target Start/End: Original strand, 29732789 - 29732884
Alignment:
Q  612 tattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacata 707  Q
    |||||||||| ||||||||||||| ||| ||| |||||  |||||||||||||||||||  | | |||||||||||||||||||||||||||||||    
T  29732789 tattcaaactaaaaataagatccgtaaaaataggaaatgatcatcattgtaactaacacggagaggatcaatattgtaatcaataaaattaacata 29732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 730 - 954
Target Start/End: Original strand, 29732874 - 29733090
Alignment:
Q  730 aaattaacatacaatttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgtttt 829  Q
    |||||||||||  |||| || ||||||||| | | ||| |||| ||||||||||||||||| |||||||  ||  |||| |||||||||||||           
T  29732874 aaattaacata--attttaatcgaatatctttatcaactttctacgttgttattttctttagtttatacggaggaaaaaaaataaagtttata------- 29732964  T
Q  830 ttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag 927  Q
    | ||| | |||||||||||||||| |||||| |||||||||||||  ||  ||||||||| ||| ||||||||||| |||| ||||||||||| | |||     
T  29732965 tcctagagaatgattataatgttcattattaaaactttgttatttgatacaataagtatgggcaaaaaactagaagcagtgctctaacaaaaagaggaa- 29733063  T
Q  928 aaataaatttatattgtatttttattt 954  Q
    ||| ||| ||||||||| |||||||||    
T  29733064 aaacaaagttatattgtgtttttattt 29733090  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 955
Target Start/End: Complemental strand, 38563059 - 38563005
Alignment:
Q  901 aagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 955  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  38563059 aagaaatgctctaacaaaaataaggagatataaagttatattgtatttttatttg 38563005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 612 - 697
Target Start/End: Original strand, 45155721 - 45155806
Alignment:
Q  612 tattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 697  Q
    |||| ||| ||||||||||||||| ||| || | |||  ||  | ||||||||||||||| ||| |||||||||| ||||||||||    
T  45155721 tattgaaattgaaaataagatccgtaaagattaaaaaaagtgtttattgtaactaacacataaaagatcaatattctaatcaataa 45155806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 875 - 955
Target Start/End: Original strand, 50922 - 51002
Alignment:
Q  875 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 955  Q
    ||||||||||||||||  |||| || |||||||| ||||| ||||||||||||||| ||  ||||||| | ||||||||||    
T  50922 tatgataagtatgagccaaaaattataagaagtgttctaaaaaaaataagaagaaaaaatattatattttgtttttatttg 51002  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 697
Target Start/End: Complemental strand, 24988380 - 24988287
Alignment:
Q  604 caatcttttattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 697  Q
    ||||||| |||| ||| ||||||| | || || ||| |||| ||||  ||||||| |||||||||||||||| |||| ||||| |||| |||||    
T  24988380 caatcttctatttaaattgaaaatgaaattcgtaaacataaaaaataatcatcatggtaactaacacaaaaaagatctatattctaataaataa 24988287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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