View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_20 (Length: 404)
Name: NF6900_low_20
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 300647 - 301010
Alignment:
| Q |
17 |
gacatcagatgaaaaaattgattgctcttcaactaccaccaatgccattcatctcttcctattaaacacttctccctcatttcaaagacattccaatata |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
300647 |
gacaacagatgaaaaaattgattgctcttcaactaccaccaatgccattcatctc---ctattaaacacttccccctcatttcaaagacattccaatata |
300743 |
T |
|
| Q |
117 |
ttaactatttttctttgttttgttcttatagtaactatttttcggtagaacttagaaacatgttgatggctaagtttggagtatctcaaatattcttggt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
300744 |
ttaactatttttctttgttttgttcttatagtaactatttttctgtagaacttagaaacatgttgatggctaagtttggagtatctcaaatattcttggt |
300843 |
T |
|
| Q |
217 |
gcttatcatggtcttaagtggtgcagtcacaggccaaaatgttcctgccatgttcatatttggtgactcacttattgataatggtaacaataacaacatg |
316 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
300844 |
gcttatcatgatcttgagtggtgcagtcacaggccaaaatgttcctgccatgttcatttttggtgactcacttattgataatggtaacaataacaacatg |
300943 |
T |
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| Q |
317 |
gcttcattagctaaagctaactattttccatatggtattgacttcaatggtggaccgactggtcgct |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
300944 |
gcttcattagctaaagctaactattttccatatggtattgacttcaatggtggaccaactggtcgct |
301010 |
T |
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