View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_21 (Length: 396)
Name: NF6900_low_21
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 40478258 - 40477869
Alignment:
| Q |
1 |
ttgaatttatatgcatattcattttcattatttgaattagaagttacaagtctttcctgaaaataaaattatcaaatgctcaagagaattatgtttattc |
100 |
Q |
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| T |
40478258 |
ttgaatttatatgcatattcattttcattatttgaattagaagttacaagtctttcctgaaaataaaattatcaaatgctcaagagaattatgtttattc |
40478159 |
T |
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| Q |
101 |
ctcatccacaggatacaaaacatacctggtgaaaatcttctgcttcaatagtttctcaagttcggtcaatccaccttgatccgagtcagaacaattaatt |
200 |
Q |
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| T |
40478158 |
ctcatccacaggatacaaaacatacctggtgaaaatcttctgcttcaatagtttctcaagttcggtcaatccaccttgatccgagtcagaacaattaact |
40478059 |
T |
|
| Q |
201 |
tgaacattactttcaccaactgctctttgttgattgccagaagattcttttgcaacctgtttttcatataggaaatgaaaaaacagtgagatatcaataa |
300 |
Q |
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| T |
40478058 |
tgaacattactttcaccaactgctctttgttgattgccagaagattcttttgcaacctgtttttcatataggaaatgaaaaaacagtgagatatcaataa |
40477959 |
T |
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| Q |
301 |
taa--------cacagtttcaccaatcaataggtaacattgcagttccaatactcaatatataatatagcaaccaatagaaataaagattgat |
385 |
Q |
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| T |
40477958 |
taacacaataacacagtttcaccaatcaataggtaacattgcagttccaatactcaatatataatat---aaccaatagaaataaagattgat |
40477869 |
T |
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