View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_22 (Length: 395)

Name: NF6900_low_22
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_22
NF6900_low_22
[»] scaffold1432 (1 HSPs)
scaffold1432 (4-369)||(1280-1645)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-374)||(21728-22096)


Alignment Details
Target: scaffold1432 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 369
Target Start/End: Original strand, 1280 - 1645
Alignment:
Q  4 gagaaggggtctagccgttggactaggaattgcagaaaaagaagagtcgtgtcagagatgaaatcgtgcatagagaagtgtcgtatacatggaatggcaa 103  Q
    |||||| |||||||||||||||| |||||| ||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1280 gagaagaggtctagccgttggacaaggaatcgcacacaaagaagagtcttgtcagagatgaaatcgcgcatagagaagtgtcgtatacatggaatggcaa 1379  T
Q  104 cttgaaacgccgccaacgtacactagatttcgaagagaatggaagagcagagattgagaaaggatagggttcggttatttttattgttagaaattttact 203  Q
    ||||||| | |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  1380 cttgaaaaggcgccaacgtacactagatgtcaaagagaatggaagagcagagattgagagaggatagggttcggttatttttattgtttgaaattttact 1479  T
Q  204 tgtaaggccaagaggatgctgaatttagctaaagccgctataatccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacaca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480 tgtaaggccaagaggatgctgaatttagctaaagccgctataatccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacaca 1579  T
Q  304 cccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaaatcaccaacaatg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  1580 cccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaattcaccaaaaatg 1645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 22096 - 21728
Alignment:
Q  1 aaagagaaggggtctagccgttggactaggaattgcagaaaaagaagagtcgtgtcagagatgaaatcgtgcatagagaagtgtcgtatacatggaatgg 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |  ||||||||||||||||  |||||||||||    
T  22096 aaagagaaggggtctagccgttggactatgaattgcagaaaaagaagagtcgtgtcagagattagatagcacatagagaagtgtcgtgcacatggaatgg 21997  T
Q  101 caacttgaaacgccgccaacgtacactagatttcgaagagaatggaagagcagagattgagaaaggatagggttcggttatttttattgttagaaatttt 200  Q
    |||||||||| | | | |||||||||||||| ||| ||| ||||||||| |||||||||||||||  |||||||| ||||||||||||||| ||||||||    
T  21996 caacttgaaaaggcactaacgtacactagatgtcgtagaaaatggaagatcagagattgagaaagactagggttcagttatttttattgtttgaaatttt 21897  T
Q  201 acttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaac 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     | |||||||| |||||||||||||||||||    
T  21896 acttgtaaggccaagaggatggtgaatttagctaaagccgctataatccaattactcaaaatact-----agtaaaccaaatcactttcaaataccaaac 21802  T
Q  301 acacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaaatcaccaacaatgacatt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21801 acacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaaatcaccaacaatgacatt 21728  T

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