View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_23 (Length: 388)
Name: NF6900_low_23
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 23951987 - 23951624
Alignment:
| Q |
19 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttgtggttgaggttagtttcttaa |
118 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23951987 |
acatctaagttcaaatcccgatttgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttgtggttgaggttagtttcttaa |
23951888 |
T |
|
| Q |
119 |
aaaatttcactcaatttcttttcatcgattatccctttatttatatgcttttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
218 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23951887 |
aaaaattcagtcaatttcttttcatcgattatccctttatttatatgcttttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
23951788 |
T |
|
| Q |
219 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactgattgttaactagattggtgacaaagaacaaatggatctcgtttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
23951787 |
ccttttgtgggttttgaggaaaagataccctaagcttaactagattgttgactgattgttaactagattggtgactaagaacaaatggatctggtttgtt |
23951688 |
T |
|
| Q |
319 |
attgattgattgtcaaagtctatctctctaaatcaactatatctcatattctgtttcatctcac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
23951687 |
attgattgattgtcaaagtctatctctctaaatcaactagatctcatattctgtttcgtctcac |
23951624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 620833 - 620471
Alignment:
| Q |
19 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttgtggttgaggttagtttcttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
620833 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttgtggttgaggttagtttcttaa |
620734 |
T |
|
| Q |
119 |
aaaatttcactcaatttcttttcatcgattatccctttatttatatgcttttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
620733 |
aaa-tttcactcaatttcttttcatcgattatccctatttttatatgattttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
620635 |
T |
|
| Q |
219 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactgattgttaactagattggtgacaaagaacaaatggatctcgtttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
620634 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactaattgttaactagattggtgactaagaacaaatggatcttgtttgtt |
620535 |
T |
|
| Q |
319 |
attgattgattgtcaaagtctatctctctaaatcaactatatctcatattctgtttcatctcac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
620534 |
attgattgattgtcaaagtctatctctctaaatcaactagatctcatattctgtttcgtctcac |
620471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 35406970 - 35407332
Alignment:
| Q |
19 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttgtggttgaggttagtttcttaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
35406970 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttatgaagttcttgtggttgaggttagtttcttaa |
35407069 |
T |
|
| Q |
119 |
aaaatttcactcaatttcttttcatcgattatccctttatttatatgcttttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35407070 |
aa-atttcactcaatttcttttcatcgattatccctatttttatatgattttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
35407168 |
T |
|
| Q |
219 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactgattgttaactagattggtgacaaagaacaaatggatctcgtttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
35407169 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactaattgttaactagattggtgactaagaacaaatggatcttgtttgtt |
35407268 |
T |
|
| Q |
319 |
attgattgattgtcaaagtctatctctctaaatcaactatatctcatattctgtttcatctcac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
35407269 |
attgattgattgtcaaagtctatctctctaaatcaactagatctcatattctgtttcgtctcac |
35407332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 2372015 - 2371869
Alignment:
| Q |
84 |
ttctgaagttcttgtggttgaggttagtttcttaaaaaatttcactcaatttcttttcatcgattatccctttatttatatgcttttcattcatataacc |
183 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |||||| | ||||||||| |||| |||||||||||||||| || | || ||||| |
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|
| T |
2372015 |
ttctgcagttcttgtggttgaggttagtttcttcaaaaagatcactccaaatcttttcattaattacccctttatttatatgccttgcttt----taacc |
2371920 |
T |
|
| Q |
184 |
tagataatcatttcagcaatcaagcttga-ggagtcccttttgtgggtttt |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| ||||||| |||||||| |
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|
| T |
2371919 |
tagatacccatttcagcaatcaagcttgagggagacccttttatgggtttt |
2371869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 34586402 - 34586764
Alignment:
| Q |
19 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttgtggttgaggttagtttcttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
34586402 |
acatctaagttcaaatcccggttcgtgttcatctcagttctgctcatttcaatccctttatatcgttctgaagttcttatggttgaggttagtttcttaa |
34586501 |
T |
|
| Q |
119 |
aaaatttcactcaatttcttttcatcgattatccctttatttatatgcttttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34586502 |
aa-atttcactcaatttcttttcatcgattatccctatttttatatgattttcattcatataacctagataatcatttcagcaatcaagcttgaggagtc |
34586600 |
T |
|
| Q |
219 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactgattgttaactagattggtgacaaagaacaaatggatctcgtttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
34586601 |
ccttttgtgggttttgaggaaaagaaaccctaagcttaactagattgttgactaattgttaactagattggtgactaagaacaaatggatcttgtttgtt |
34586700 |
T |
|
| Q |
319 |
attgattgattgtcaaagtctatctctctaaatcaactatatctcatattctgtttcatctcac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
34586701 |
attgattgattgtcaaagtctatctctctaaatcaactagatctcatattctgtttcgtctcac |
34586764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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