View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_25 (Length: 364)
Name: NF6900_low_25
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 27775084 - 27774748
Alignment:
| Q |
12 |
gaacctgtgtttgcttatcagacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataa |
111 |
Q |
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| T |
27775084 |
gaacctgtgtttgcttatcagacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataa |
27774985 |
T |
|
| Q |
112 |
ctacggctgttgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagat |
211 |
Q |
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| T |
27774984 |
ctacggctgttgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagat |
27774885 |
T |
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| Q |
212 |
atttttccttacattgatttttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774884 |
atttttccttacattgatttttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactca |
27774785 |
T |
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| Q |
312 |
gctgaggagagtactgctactcctgcaaccaatgatg |
348 |
Q |
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| T |
27774784 |
gctgaggagagtactgctactcctgcaaccaatgatg |
27774748 |
T |
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