View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_29 (Length: 354)

Name: NF6900_low_29
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_29
NF6900_low_29
[»] chr7 (4 HSPs)
chr7 (16-345)||(24907028-24907359)
chr7 (147-222)||(18264575-18264650)
chr7 (154-227)||(23869296-23869369)
chr7 (144-212)||(24823039-24823107)
[»] chr1 (4 HSPs)
chr1 (99-340)||(31302245-31302482)
chr1 (144-212)||(25244983-25245051)
chr1 (144-222)||(25275089-25275167)
chr1 (144-212)||(46244306-46244374)
[»] chr6 (1 HSPs)
chr6 (144-222)||(26857966-26858044)
[»] chr5 (4 HSPs)
chr5 (146-222)||(8933907-8933983)
chr5 (144-222)||(5708120-5708198)
chr5 (155-212)||(9272896-9272953)
chr5 (144-212)||(10369651-10369719)
[»] scaffold0102 (1 HSPs)
scaffold0102 (144-222)||(14385-14463)
[»] chr4 (1 HSPs)
chr4 (145-227)||(41189587-41189669)
[»] chr3 (4 HSPs)
chr3 (144-202)||(9129510-9129568)
chr3 (144-202)||(9137617-9137675)
chr3 (144-198)||(34365439-34365493)
chr3 (144-212)||(41397773-41397841)
[»] chr2 (2 HSPs)
chr2 (144-222)||(17893953-17894031)
chr2 (144-222)||(43323718-43323796)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 24907359 - 24907028
Alignment:
Q  16 cagtaacaaattataataaattattacttatcaaggaagatatcaaata--cgtaataacaatgagctcaaggaaaatgtggaaattcaaataaccaacc 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907359 cagtaacacattataataaattattacttatcaaggaagatatcaaaaagacgtaataacaatgagctcaaggaaaatgtggaaattcaaataaccaacc 24907260  T
Q  114 gaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatct 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907259 gaggtataaaatgaaagtaacgttacataagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatct 24907160  T
Q  214 accaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgccctttcgtccataattttct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907159 accaaacaatttttcttcttcttatattagaaacgtcgttacatgcaactctagattataaatgggacgtttaaccttgccctttcgtccataattttct 24907060  T
Q  314 tcttcttattagaaatgtaatccacaggttct 345  Q
    ||||||||||||||||||||||||||| ||||    
T  24907059 tcttcttattagaaatgtaatccacagcttct 24907028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 18264650 - 18264575
Alignment:
Q  147 tggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    ||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  18264650 tggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 18264575  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 23869369 - 23869296
Alignment:
Q  154 gtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaattttt 227  Q
    ||||||||| |||||||| ||||||| ||   |||| ||||||||| |||  ||||||| ||||||||||||||    
T  23869369 gtgatccactaaatccattatcatccgattaatccactacaaaatctatcagatccatccaccaaacaattttt 23869296  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 24823107 - 24823039
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 212  Q
    |||||||||| |||||||  | |||||||  ||||||||| ||| | || |||||||||||||||||||    
T  24823107 gggtggcaatatgatccatgagatccatatccatccaatctctctactataaaatccatctaatccatc 24823039  T

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Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 99 - 340
Target Start/End: Original strand, 31302245 - 31302482
Alignment:
Q  99 ttcaaataaccaaccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 198  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  31302245 ttcaaataaccaactgaggtataaaattaaagtaacgttacataagggtggcaatgtgatccaccaaatccatatccatccaatccctcgagtacaaaat 31302344  T
Q  199 ccatctaatccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgcccttt 298  Q
    ||||||||| ||||||||||||||||||||  |||||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31302345 ccatctaattcatctaccaaacaatttttc--cttct--tattagaaatgtcgttacatgcgactctagattataaatgggacgtttcaccttgcccttt 31302440  T
Q  299 cgtccataattttcttcttcttattagaaatgtaatccacag 340  Q
    |||||||||||||||||||||||||||||| ||| |||||||    
T  31302441 cgtccataattttcttcttcttattagaaacgtattccacag 31302482  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 25244983 - 25245051
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 212  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| ||||||||    
T  25244983 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatcaaatccatc 25245051  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 25275089 - 25275167
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    |||||||||| |||||||  | || ||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  25275089 gggtggcaatatgatccatgagattcatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 25275167  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 46244374 - 46244306
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 212  Q
    ||||||||||  ||||||  |||||||||  ||||| |||| |||| ||||||||||||| ||||||||    
T  46244374 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 46244306  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 26857966 - 26858044
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    |||||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| |||||||||| |||||||    
T  26857966 gggtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatctatcaaacaa 26858044  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 8933983 - 8933907
Alignment:
Q  146 gtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    |||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  8933983 gtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatccatcaaacaa 8933907  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 5708120 - 5708198
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    |||||||||| |||||||  | |||||||  |||||||||  |||| ||||||||||||| |||||||| | |||||||    
T  5708120 gggtggcaatatgatccatgagatccatatccatccaatctatccactacaaaatccatccaatccatccatcaaacaa 5708198  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 9272953 - 9272896
Alignment:
Q  155 tgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 212  Q
    ||||||| || |||||||  |||||||||| |||| ||||||||||||| ||||||||    
T  9272953 tgatccatcagatccatatccatccaatccatccactacaaaatccatccaatccatc 9272896  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 10369719 - 10369651
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 212  Q
    ||||||||||  ||||||  |||||||||  ||||| |||| |||| ||||||||||||| ||||||||    
T  10369719 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 10369651  T

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Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 14463 - 14385
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  14463 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 14385  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 41189587 - 41189669
Alignment:
Q  145 ggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaattttt 227  Q
    ||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | ||||||| ||||    
T  41189587 ggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaaatttt 41189669  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 9129568 - 9129510
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 202  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9129568 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9129510  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 9137675 - 9137617
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 202  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9137675 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9137617  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 34365439 - 34365493
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 198  Q
    |||||||||| |||||||||||||| |||| |||||||||| | || ||||||||    
T  34365439 gggtggcaatttgatccaccaaatctataaccatccaatccattcactacaaaat 34365493  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 41397773 - 41397841
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 212  Q
    ||||||||||  ||||||  |||||||||  ||||| |||| |||| ||||||||||||| ||||||||    
T  41397773 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 41397841  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 17893953 - 17894031
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    ||||||||||  |||||| ||||||||||  |||||||||| ||||  | || ||||||| ||||||||||||||||||    
T  17893953 gggtggcaataggatccatcaaatccatatacatccaatccatccaccataatatccatccaatccatctaccaaacaa 17894031  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 43323718 - 43323796
Alignment:
Q  144 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 222  Q
    |||||||||| |||||||  | ||| |||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  43323718 gggtggcaatatgatccatgagatctatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 43323796  T

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