View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_30 (Length: 353)
Name: NF6900_low_30
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 9381136 - 9381474
Alignment:
| Q |
1 |
aatatcaccacccttcaaaatctcacccttaggacccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgct |
100 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9381136 |
aatatcacgacccttcaaaatctcacccttgggacccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgct |
9381235 |
T |
|
| Q |
101 |
aaagtaactccaggacacatccttcttcccgacccaaatggcaaaatctgaaaattttgtcccctcacatcaataaccccattggaatttgctgaatttt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9381236 |
aaagtaactccaggacacatccttcttcctgacccaaatggcaaaatctgaaaattttgtcccctcacgtcaataaccccattggaatttgctgaatttt |
9381335 |
T |
|
| Q |
201 |
ttagaaacctttctggattaaattccaatggtttctcccaataagctgggtttcttcccatagcccaattattgacaaatattaaactattttctgggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9381336 |
ttagaaacctttctggattaaattccaatggtttctcccaataagctgggtttcttcccatagcccaattattgacaaatattaaactattttctgggat |
9381435 |
T |
|
| Q |
301 |
cacataattttcaattttacattgcgtgacacatcttct |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
9381436 |
cacataattttcaattttacattgcgtgacacatcttct |
9381474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 9398561 - 9398899
Alignment:
| Q |
1 |
aatatcaccacccttcaaaatctcacccttaggacccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9398561 |
aatatcaccacccttcaaaatctcacccttaggacccacaaaattaaaatcaaagcattgaattatggcaccaagcaaagctggaacttcttgcattgct |
9398660 |
T |
|
| Q |
101 |
aaagtaactccaggacacatccttcttcccgacccaaatggcaaaatctgaaaattttgtcccctcacatcaataaccccattggaatttgctgaatttt |
200 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
9398661 |
aaagtaaccccaggacacatccttcttcctgacccaaatggcaaaatctgaaaattttgccccctcacatcaataaccccattggaatttgttgaatttt |
9398760 |
T |
|
| Q |
201 |
ttagaaacctttctggattaaattccaatggtttctcccaataagctgggtttcttcccatagcccaattattgacaaatattaaactattttctgggat |
300 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
9398761 |
ttagaaatctttctggattaaattccaatggtttgtcccaataagctgagtttcttcccatagcccaattattcacaaagattaaactattttctgggat |
9398860 |
T |
|
| Q |
301 |
cacataattttcaattttacattgcgtgacacatcttct |
339 |
Q |
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| T |
9398861 |
cacataattttcaattttgcattgcgtgacacatcttct |
9398899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 23244784 - 23244654
Alignment:
| Q |
44 |
ttaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacccaaatggca |
143 |
Q |
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||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||| | |
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| T |
23244784 |
ttaaaatcaaaacactgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagatccaaatggta |
23244685 |
T |
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| Q |
144 |
aaatctgaaaattttgtcccctcacatcaat |
174 |
Q |
| |
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|| ||||||| ||||||||| |||||||| |
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| T |
23244684 |
gaagttgaaaatgttgtcccctaacatcaat |
23244654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 34762524 - 34762558
Alignment:
| Q |
107 |
actccaggacacatccttcttcccgacccaaatgg |
141 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
34762524 |
actccaggacacatccttcttccagacccaaatgg |
34762558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 34781664 - 34781630
Alignment:
| Q |
107 |
actccaggacacatccttcttcccgacccaaatgg |
141 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
34781664 |
actccaggacacatccttcttccagacccaaatgg |
34781630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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