View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_31 (Length: 348)

Name: NF6900_low_31
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_31
NF6900_low_31
[»] chr3 (5 HSPs)
chr3 (139-340)||(26490831-26491034)
chr3 (16-73)||(11152204-11152261)
chr3 (16-93)||(20251497-20251574)
chr3 (19-83)||(9129588-9129652)
chr3 (19-83)||(9137695-9137759)
[»] chr5 (3 HSPs)
chr5 (3-93)||(17758906-17758996)
chr5 (18-73)||(8274708-8274763)
chr5 (25-90)||(26178759-26178824)
[»] chr2 (4 HSPs)
chr2 (14-93)||(5595106-5595185)
chr2 (16-93)||(10880016-10880093)
chr2 (3-93)||(37120468-37120558)
chr2 (33-93)||(29687718-29687778)
[»] chr7 (2 HSPs)
chr7 (3-93)||(8790643-8790733)
chr7 (49-86)||(39970018-39970055)
[»] chr1 (2 HSPs)
chr1 (3-93)||(19315069-19315159)
chr1 (16-92)||(45638066-45638142)
[»] chr6 (1 HSPs)
chr6 (16-92)||(30449487-30449563)
[»] chr4 (2 HSPs)
chr4 (17-93)||(11790755-11790831)
chr4 (16-91)||(55882089-55882164)
[»] chr8 (5 HSPs)
chr8 (26-73)||(41344246-41344293)
chr8 (3-93)||(26131857-26131947)
chr8 (48-93)||(43218073-43218118)
chr8 (3-93)||(41417799-41417890)
chr8 (51-93)||(22255230-22255272)
[»] scaffold0093 (1 HSPs)
scaffold0093 (3-93)||(16324-16414)
[»] scaffold0178 (1 HSPs)
scaffold0178 (48-92)||(11281-11325)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 139 - 340
Target Start/End: Original strand, 26490831 - 26491034
Alignment:
Q  139 gaaggaaactaaatcctcaggaacaaagttccggtggcatcatttcgaaggag--gtcgaagatcatcaggaggtgacgagtgaagccggaagttagcat 236  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||    
T  26490831 gaagaaaactaagtcctcaggaacaaagttccggtagcatcatttcgaaggagaggtcgaagatcatcaggtggtgacgagtgaagcaggaagttagcat 26490930  T
Q  237 cagatgttgcccctaacttggcaaaatagtttgcacaatggttaccttcacgaagagtatgtcttagcgaaacattcatctgagagagcttgtctttgat 336  Q
    | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||    
T  26490931 cggatgttgcccctaacttggcaaaatagtctgcacaatggttatcttcacgaagagtatgacgtagcgaaacattcatctgagaaagcttatctttgat 26491030  T
Q  337 gtcc 340  Q
    ||||    
T  26491031 gtcc 26491034  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 11152204 - 11152261
Alignment:
Q  16 ggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtc 73  Q
    |||||||||||||| ||||||||||| ||||  ||||||||||||||||| |||||||    
T  11152204 ggactagctgataatgtggcaaccccagctagcgtgtgagctacctcattggcttgtc 11152261  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 20251574 - 20251497
Alignment:
Q  16 ggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    |||||||| | ||| ||||||||||| || | |||| |||||||||| ||||||||||||||| | ||||||||||||    
T  20251574 ggactagcggttaatgtggcaaccccggcaagggtgcgagctacctcctttgcttgtcgcctattgaactcgacctta 20251497  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 9129588 - 9129652
Alignment:
Q  19 ctagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaa 83  Q
    |||||| |||| ||||||||||| ||||| |||| | |||||||||||| |||||||||| ||||    
T  9129588 ctagctaataatgtggcaacccctgctaaagtgtaaactacctcatttgtttgtcgcctattaaa 9129652  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 9137695 - 9137759
Alignment:
Q  19 ctagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaa 83  Q
    |||||| |||| ||||||||||| ||||| |||| | |||||||||||| |||||||||| ||||    
T  9137695 ctagctaataatgtggcaacccctgctaaagtgtaaactacctcatttgtttgtcgcctattaaa 9137759  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 17758996 - 17758906
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  17758996 ataataaattttacgactagctgataatgtggcaacccccgctaaggtgtgagctatctcatttgcttgtcgcctactaaactcgatctta 17758906  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 8274763 - 8274708
Alignment:
Q  18 actagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtc 73  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  8274763 actagctaataatgtggcaacccccgctaacgtgtgagctacctcattcgcttgtc 8274708  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 26178824 - 26178759
Alignment:
Q  25 gataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacc 90  Q
    ||||| |||||||||||| | |  ||||||| ||||||||||| |||||| ||| |||||||||||    
T  26178824 gataatgtggcaaccccctcaagtgtgtgagatacctcatttgtttgtcgtctattaaactcgacc 26178759  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 5595106 - 5595185
Alignment:
Q  14 taggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    |||| ||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5595106 tagggctagctgataatgtggcagctcccgctaaagtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 5595185  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 10880093 - 10880016
Alignment:
Q  16 ggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||||| || ||||||||||||||||| |||| |||||| ||||||| ||||||||| |||||||||||||||    
T  10880093 ggactagctgacaatgtggcaacccccgctaaagtgtaagctacttcatttgtttgtcgcctgctaaactcgacctta 10880016  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 37120468 - 37120558
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||| || ||||||| |||||| |||||||||||  |  ||||||||||||||||||||||||||| |||  ||||||||||||||    
T  37120468 ataataaatattgggactagatgataatgtggcaaccccaacataggtgtgagctacctcatttgcttgtctcctgttaaactcgacctta 37120558  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 29687718 - 29687778
Alignment:
Q  33 ggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||| || | ||||||||||| |||||||| ||||||| | ||||| |||||||||    
T  29687718 ggcaaccccagcaagggtgtgagctatctcatttgtttgtcgcttgctaaattcgacctta 29687778  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 8790733 - 8790643
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||| || |||||||||||||| ||||||||| | || | |||||||||||||||||||||||||| |||  ||||||||||||||    
T  8790733 ataataaatattgggactagctgataatgtggcaacctcagcaagggtgtgagctacctcatttgcttgtctcctgttaaactcgacctta 8790643  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 39970055 - 39970018
Alignment:
Q  49 gtgtgagctacctcatttgcttgtcgcctactaaactc 86  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  39970055 gtgtgagcaacctcatttgcttgtcgcctagtaaactc 39970018  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 19315159 - 19315069
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||| || | ||||| |||||| ||||||||  | |||||||||||||||| || | |||||||||||||||||||||||||||||    
T  19315159 ataataaatattggaactagatgataatgtggcaacttctgctaaggtgtgagctatcttaattgcttgtcgcctactaaactcgacctta 19315069  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 45638142 - 45638066
Alignment:
Q  16 ggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctt 92  Q
    ||||||||| ||||  |||||||||| ||||  ||||||||||||||||| ||||||| || | ||||||| |||||    
T  45638142 ggactagctaataatatggcaaccccagctatcgtgtgagctacctcattcgcttgtctccgattaaactcaacctt 45638066  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 30449487 - 30449563
Alignment:
Q  16 ggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctt 92  Q
    ||||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||| || || ||||||| |||||    
T  30449487 ggactagttgataatgtggcaacccctgctaaagtgtgagctacctcatttgcttgttgcatattaaactcaacctt 30449563  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 11790831 - 11790755
Alignment:
Q  17 gactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||||||| ||||||||||||| || | ||||||||| ||||||| ||||||| | | | ||||||||||||    
T  11790831 gactagctgataatgtggcaacccccgttaggttgtgagctaactcattttcttgtcgtcaattgaactcgacctta 11790755  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 55882089 - 55882164
Alignment:
Q  16 ggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacct 91  Q
    |||||||| | ||| | ||||||||| || | |||||||||||||||||||| |||||||||  | ||||||||||    
T  55882089 ggactagcggttaatgcggcaaccccggcaagggtgtgagctacctcatttgtttgtcgcctgttgaactcgacct 55882164  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 41344293 - 41344246
Alignment:
Q  26 ataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtc 73  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  41344293 ataatgtggcaacccccgctaacgtgtgagctacctcattcgcttgtc 41344246  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 26131947 - 26131857
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    |||||||||  | |||||||| | ||| | ||||||||| || | ||||||||||||||||||| ||||||||||  | ||||||||||||    
T  26131947 ataataaatagtgggactagcggttaatgcggcaaccccagcaagggtgtgagctacctcatttccttgtcgcctgttgaactcgacctta 26131857  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 43218073 - 43218118
Alignment:
Q  48 ggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||    
T  43218073 ggtgtgagctacctcatttgcttgtcgcctgttgaactcgacctta 43218118  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 41417799 - 41417890
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctact-aaactcgacctta 93  Q
    ||||||||| |  |||||||||||||| |||  |||||| || |  ||||||||||||||||||||||||| |||  | |||||||||||||    
T  41417799 ataataaatatagggactagctgataatgtgataaccccagcaagagtgtgagctacctcatttgcttgtctcctgttaaaactcgacctta 41417890  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 22255230 - 22255272
Alignment:
Q  51 gtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  22255230 gtgagctacctcatttgcttgtcgccgattaaactcaacctta 22255272  T

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Target: scaffold0093 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 16324 - 16414
Alignment:
Q  3 ataataaatcttaggactagctgataacgtggcaacccccgctaaggtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 93  Q
    ||||||||| || ||||||| |||||| |||||||||||  | | |||||| ||||||| ||||||||||| | |  ||||||||||||||    
T  16324 ataataaatattgggactagttgataatgtggcaaccccaacaagggtgtgtgctacctgatttgcttgtctcttcttaaactcgacctta 16414  T

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Target: scaffold0178 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 11325 - 11281
Alignment:
Q  48 ggtgtgagctacctcatttgcttgtcgcctactaaactcgacctt 92  Q
    |||||||||||||||||||| || ||||| | |||||||||||||    
T  11325 ggtgtgagctacctcatttgtttatcgccgattaaactcgacctt 11281  T

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