View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_33 (Length: 346)

Name: NF6900_low_33
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_33
NF6900_low_33
[»] chr1 (6 HSPs)
chr1 (1-346)||(3376684-3377029)
chr1 (9-314)||(43783493-43783798)
chr1 (143-314)||(44489586-44489757)
chr1 (12-314)||(48998233-48998535)
chr1 (191-268)||(28444698-28444774)
chr1 (200-253)||(5663986-5664038)
[»] chr3 (12 HSPs)
chr3 (9-314)||(12073216-12073521)
chr3 (1-314)||(19196960-19197273)
chr3 (143-268)||(1597161-1597286)
chr3 (143-279)||(6776982-6777118)
chr3 (168-300)||(16255115-16255247)
chr3 (200-310)||(7628339-7628449)
chr3 (204-314)||(39687115-39687225)
chr3 (177-280)||(21565110-21565213)
chr3 (185-292)||(24737841-24737948)
chr3 (188-292)||(25156651-25156755)
chr3 (9-116)||(7419667-7419774)
chr3 (12-50)||(34438571-34438609)
[»] chr2 (10 HSPs)
chr2 (11-313)||(18205235-18205537)
chr2 (9-314)||(31117680-31117985)
chr2 (163-314)||(28034771-28034922)
chr2 (191-280)||(941309-941398)
chr2 (183-314)||(11806629-11806760)
chr2 (186-289)||(34370704-34370807)
chr2 (202-291)||(21078848-21078937)
chr2 (33-91)||(11806486-11806544)
chr2 (211-291)||(27755479-27755559)
chr2 (176-240)||(15423098-15423162)
[»] chr7 (12 HSPs)
chr7 (2-314)||(21063190-21063501)
chr7 (1-192)||(12626673-12626864)
chr7 (143-314)||(38456614-38456785)
chr7 (176-266)||(13610071-13610161)
chr7 (185-297)||(22516993-22517106)
chr7 (225-311)||(12626593-12626679)
chr7 (171-314)||(15825227-15825370)
chr7 (191-280)||(8523440-8523529)
chr7 (185-288)||(22516102-22516208)
chr7 (200-257)||(10584931-10584988)
chr7 (230-277)||(16782142-16782189)
chr7 (176-237)||(13692841-13692902)
[»] scaffold0251 (1 HSPs)
scaffold0251 (143-314)||(17889-18059)
[»] chr5 (6 HSPs)
chr5 (143-314)||(2742122-2742293)
chr5 (143-314)||(13273281-13273452)
chr5 (191-309)||(20942871-20942989)
chr5 (204-280)||(6704156-6704232)
chr5 (203-244)||(24210095-24210136)
chr5 (12-50)||(2742386-2742424)
[»] chr8 (10 HSPs)
chr8 (143-314)||(37228645-37228816)
chr8 (166-310)||(14096139-14096281)
chr8 (200-292)||(29370922-29371014)
chr8 (171-298)||(16997810-16997937)
chr8 (171-245)||(15910645-15910719)
chr8 (200-292)||(9236990-9237082)
chr8 (213-280)||(9385980-9386047)
chr8 (188-314)||(22722633-22722759)
chr8 (200-289)||(7083103-7083192)
chr8 (200-292)||(28837210-28837302)
[»] chr6 (3 HSPs)
chr6 (187-310)||(35013501-35013624)
chr6 (188-313)||(2028849-2028974)
chr6 (187-314)||(6286686-6286813)
[»] scaffold0010 (1 HSPs)
scaffold0010 (140-314)||(33086-33259)
[»] scaffold0408 (1 HSPs)
scaffold0408 (166-310)||(6481-6623)
[»] chr4 (12 HSPs)
chr4 (172-314)||(32308719-32308861)
chr4 (192-285)||(42706108-42706201)
chr4 (176-283)||(38650878-38650985)
chr4 (176-308)||(13504229-13504360)
chr4 (191-250)||(31813154-31813213)
chr4 (182-280)||(632880-632978)
chr4 (188-277)||(29906919-29907008)
chr4 (200-289)||(42749150-42749239)
chr4 (162-242)||(39464547-39464627)
chr4 (214-280)||(19811685-19811751)
chr4 (214-280)||(19828510-19828576)
chr4 (205-267)||(51354151-51354213)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-178)||(181096-181273)
[»] scaffold0103 (1 HSPs)
scaffold0103 (187-277)||(14393-14483)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3376684 - 3377029
Alignment:
Q  1 caatcagatgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  3376684 caatcaaatgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactaacatgagcactaccttgttttgccacctctttagcagc 3376783  T
Q  101 atcattcgctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgctt 200  Q
    ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  3376784 atccttcactgtaaaatataggtcctcttgcatgatatgtatcccctcgtcacgagttagctctctatcatgaaggagccttccagtgatggggatgctt 3376883  T
Q  201 agaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  3376884 agaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgttggtctcctcatgccatctatctgacaaggtccaaacga 3376983  T
Q  301 acccgtgagagatggaagttgctggcgctcctcataatgaggctga 346  Q
    |||||||||||||||||||| |||   |||||||||||||||||||    
T  3376984 acccgtgagagatggaagttactgatactcctcataatgaggctga 3377029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 43783493 - 43783798
Alignment:
Q  9 tgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagcatcattcg 108  Q
    ||||||||||||| ||||| |||||| ||  ||||||||||||||   ||||||||||| |||  ||||||  ||  |||||| ||||||||| | | ||    
T  43783493 tgattacacctattcaagaactcctcatagtgcctcttcagtttaccaaaactgacatgagcaacaccttgccttcacacctccttagcagcagcctccg 43783592  T
Q  109 ctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagaca 208  Q
    | ||||||  ||| || || ||| | || |||||| |||| ||||| ||||| |||||||||||||||||||| | | |||||||||||| ||  |||||    
T  43783593 cggtaaaag-tagatcttcctgcatcatctgtatctcctcatcacgggttagctctctatcatgaaggagcctcccaatgatggggatgcctatgagaca 43783691  T
Q  209 cgccacatcatctagtgtgatggtcatct-ccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtg 307  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  43783692 cgccacatcatctagtctgatggtcatctcccccaacaggtagatggaaactgctggtctcttcatgccatctctctgacaaggcacaaacgaacccgtg 43783791  T
Q  308 agagatg 314  Q
    |||||||    
T  43783792 agagatg 43783798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 44489757 - 44489586
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||| ||||| ||||  ||||||||| ||||||| || | ||||||||||||||  || ||||||||||||||||||||||||||||||||||| |||    
T  44489757 cccctcctcacgggttaactctctatcaggaaggagtctcccagtgatggggatgcccaggagacacgccacatcatctagtgtgatggtcatctctcca 44489658  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    ||  ||||||||| | |||||||||| ||||||||||| | || ||  || ||||| |||||||||||||||    
T  44489657 accagtagatggaggctgctggtctcctcatgccatctctatgtcatcgcacaaacaaacccgtgagagatg 44489586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 48998535 - 48998233
Alignment:
Q  12 ttacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagcatcattcgctg 111  Q
    |||||||||| ||||||||||||| | ||||||||||||  |   |||||||| || |||  ||| | ||||| || ||| ||||| ||| | | | |||    
T  48998535 ttacacctattcaagagctcctcgcagcgcctcttcagtacaccaaaactgacgtgagcaacaccctattttgtcatctccttagcggcagcctcctctg 48998436  T
Q  112 taaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgc 211  Q
    ||||   ||||||| | ||| | || | || |||||| ||||| ||||  ||||||||  |||||||||| | ||||| | ||||||  || ||||||||    
T  48998435 taaacagtaggtccgcctgcatcatctctagcccctcctcacgggttaactctctatcgggaaggagcctcccagtgacgaggatgcccaggagacacgc 48998336  T
Q  212 cacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagag 311  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||| || ||||||| ||||||||||| |||| ||  || ||||| ||||||||| ||    
T  48998335 cacattatctagtgtgatggtcatctccctaaccggtagatggaagctgttggtctcctcatgccatctctctgtcatcgcacaaacaaacccgtgaaag 48998236  T
Q  312 atg 314  Q
    |||    
T  48998235 atg 48998233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 28444774 - 28444698
Alignment:
Q  191 ggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctc 268  Q
    |||||||  ||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  28444774 ggggatgtctaggagacaagccacatcatc-agtgtgatggtcatctctccaacaggaagatggaagctgctggtctc 28444698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 5664038 - 5663986
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatg 253  Q
    ||||||||||||||||| ||| |||||||  ||||||| |||||||||||||||    
T  5664038 tagaagacacgccacattatcgagtgtgacagtcatct-cccaacaggtagatg 5663986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 12073521 - 12073216
Alignment:
Q  9 tgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagcatcattcg 108  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||   ||||||||||| ||   |||||||||| ||||||| |||||| || | | ||    
T  12073521 tgattacacctattcaagagctactcgtaccgcctcttcagtttaccaaaactgacatgagccgcaccttgttttcccacctccttagcaacaacctccg 12073422  T
Q  109 ctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagaca 208  Q
    ||||||||  | | |||||  || | ||||||||||| | | || ||||||  ||||||| | |||||||||| |  ||||||||||||| ||| |||||    
T  12073421 ctgtaaaaagttgctcctccggcatcatatgtatccctttggcatgagttaactctctattaagaaggagcctccccgtgatggggatgcctaggagaca 12073322  T
Q  209 cgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtga 308  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  12073321 cgccacatcatctagtgtgatggtcatttccccaacaggtagatggaagttgctggtctcctcatgccatctctctgacaaggcacaaacgaacccgtga 12073222  T
Q  309 gagatg 314  Q
    ||||||    
T  12073221 gagatg 12073216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 19197273 - 19196960
Alignment:
Q  1 caatcagatgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagc 100  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||| ||||||||   ||||||| ||| |||  ||||||| || ||||||| |||| |||    
T  19197273 caatcagctgattacacccattgaagagctcctcgtaacgcctcctcagtttaccaaaactgaaatgagcagcaccttgtcttcccacctccttagtagc 19197174  T
Q  101 atcattcgctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgctt 200  Q
    | | | ||||||||||  ||||||||| | | | || ||||||||||  ||||||||||  ||||||| |||||||||||| | |||||||||||| | |    
T  19197173 aacctccgctgtaaaaagtaggtcctcctacatcatctgtatccccttctcacgagttaaatctctattatgaaggagcctcccagtgatggggatacct 19197074  T
Q  201 agaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacga 300  Q
    || ||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  19197073 aggagacatgccacattatctagtgtgttggtcatctccccaacaggtagaaggaagttgctggtctcctcatgccatctctctgacaaggcacaaacga 19196974  T
Q  301 acccgtgagagatg 314  Q
    |   ||||||||||    
T  19196973 aatggtgagagatg 19196960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 1597161 - 1597286
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    ||||||||| || ||||  ||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  1597161 cccctcgtctcgggttaactctctatcaggaaggagccttccagtgatggggatgcctaggagacacgccacataatctagtgtgatggtcatctcccca 1597260  T
Q  243 acaggtagatggaagttgctggtctc 268  Q
    | ||||||||||||||||||||||||    
T  1597261 ataggtagatggaagttgctggtctc 1597286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 6777118 - 6776982
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||||||||  ||||  ||||||||  |||||||||| | | |||||||||||| |||  ||||||||||||||||||||||||| || |||||||||    
T  6777118 cccctcgtcacaggttaactctctatcgggaaggagcctccaaatgatggggatgcctaggtgacacgccacatcatctagtgtgatagtaatctcccca 6777019  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatc 279  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  6777018 acaggtagatggaagatgctggtctcctcatgccatc 6776982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 16255115 - 16255247
Alignment:
Q  168 tcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtct 267  Q
    ||||||| |||||| | ||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |    
T  16255115 tcatgaatgagcctcccagtgatggggataactagaagacacgccacatcatctattgtgatggtcatctccccaacaggcagatggaagctgctggtgt 16255214  T
Q  268 catcatgccatctatctgacaaggcccaaacga 300  Q
    | |||||  |||| || |||||||| |||||||    
T  16255215 cctcatgttatctctcagacaaggcacaaacga 16255247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 7628449 - 7628339
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacg 299  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||| ||||||| || ||||| ||||| |||||||||||  |||||    
T  7628449 tagaagacacgccacatcatctagtgtgacggtcatctacccaacaagcagatggaagctgctggtgtcctcatgtcatctctctgacaaggcaaaaacg 7628350  T
Q  300 aacccgtgaga 310  Q
    |  ||||||||    
T  7628349 agtccgtgaga 7628339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 39687115 - 39687225
Alignment:
Q  204 agacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacc 303  Q
    ||||| ||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||| | ||||||||| || | || ||| || || ||||    
T  39687115 agacaagccacatcatccagtgtgatggtcatctccccaaccggcagatggaagatgctggtctcctgatgccatctctcagccatggcacacactaacc 39687214  T
Q  304 cgtgagagatg 314  Q
    |||| ||||||    
T  39687215 cgtgggagatg 39687225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 21565213 - 21565110
Alignment:
Q  177 agccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgcc 276  Q
    ||||||| || ||||||||| | ||||||||| || |||||||| ||||||||||| ||||||| ||| || ||||||||| || ||||||| | |||||    
T  21565213 agccttccagcgatggggatacctagaagacaagctacatcatcaagtgtgatggttatctccctaactggaagatggaagctgttggtctcctgatgcc 21565114  T
Q  277 atct 280  Q
    ||||    
T  21565113 atct 21565110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 24737841 - 24737948
Alignment:
Q  185 agtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatct 284  Q
    ||||||||||||   ||||||||| ||||||||||||||||||| |  |||||||| |||  | ||||||||||||||||||||  |||| ||||| ||     
T  24737841 agtgatggggatatctagaagacaagccacatcatctagtgtgacgaccatctccctaacgagcagatggaagttgctggtctccgcatgtcatctctcc 24737940  T
Q  285 gacaaggc 292  Q
    ||||||||    
T  24737941 gacaaggc 24737948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 25156651 - 25156755
Alignment:
Q  188 gatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgac 287  Q
    ||||||||||  ||||||||| | ||||||||| |||||||  |||||| || |||| |  | |||||||||||||||||| ||||||||||| |||||     
T  25156651 gatggggatgtgtagaagacatgtcacatcatcgagtgtgacagtcatcccctcaacggacaaatggaagttgctggtctcctcatgccatctctctgat 25156750  T
Q  288 aaggc 292  Q
    |||||    
T  25156751 aaggc 25156755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 7419774 - 7419667
Alignment:
Q  9 tgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagcatcattcg 108  Q
    ||||||||||||| ||||||||||||||| |||||||| ||| ||   ||||||| ||| |||  ||| ||| |||||||||| ||||| ||| ||| ||    
T  7419774 tgattacacctattcaagagctcctcgtagcgcctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgccacctccttagcggcagcatccg 7419675  T
Q  109 ctgtaaaa 116  Q
    ||||||||    
T  7419674 ctgtaaaa 7419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 34438571 - 34438609
Alignment:
Q  12 ttacacctatgcaagagctcctcgtaacgcctcttcagt 50  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  34438571 ttacacctattcaagagctcctcgtagcgcctcttcagt 34438609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 18205235 - 18205537
Alignment:
Q  11 attacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagcatcattcgct 110  Q
    ||||||| ||| |||||||||||| |  |||||||| ||||||   ||||||||||| |||  ||||||| || ||||||| |||| |||| ||| ||||    
T  18205235 attacacatattcaagagctcctcatggcgcctctttagtttaccaaaactgacatgagcagcaccttgtcttcccacctccttagtagcagcatccgct 18205334  T
Q  111 gtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacg 210  Q
    ||||||  ||||||||| ||| | || | ||| ||||| ||||||||||  ||||||| ||||||| |||| |||||||||||||||| ||||||||||     
T  18205335 gtaaaaagtaggtcctcctgcatcatctatattccctcatcacgagttaactctctataatgaaggggcctcctagtgatggggatgcctagaagacaca 18205434  T
Q  211 ccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgaga 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||| ||||||||||| ||||||||| | |||||    
T  18205435 ccacatcatctagtgtgatggtcatctccccaacatgtagatggaagttgttggtctcctcatgtcatctctctgacaaggcacaaacgaacacatgaga 18205534  T
Q  311 gat 313  Q
    |||    
T  18205535 gat 18205537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 31117680 - 31117985
Alignment:
Q  9 tgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagcatcattcg 108  Q
    ||||||||||||| | ||||||||||||| | ||| |||||| ||   ||||||| ||| |||  ||| ||| |||||||||| |||||  || | | ||    
T  31117680 tgattacacctattctagagctcctcgtagcacctgttcagtgtaccaaaactgatatgagcagcaccctgtcttgccacctccttagcgacagcctccg 31117779  T
Q  109 ctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagaca 208  Q
    ||||||||  ||||||| | ||| | || | ||||||||  ||| | | ||  ||||||||| ||||  |||| |  ||||||||||||| ||| |||||    
T  31117780 ctgtaaaaagtaggtccacctgcatcatctttatccccttctcatggggtaactctctatcaggaagaggcctccatgtgatggggatgcctaggagaca 31117879  T
Q  209 cgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtga 308  Q
     | || |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||| |||||||  |  ||| |||||||||||    
T  31117880 tgtcatatcatctagtgtgatggtcatctccctaacaggtagatgaaagttgctggtctcctcatgtcatctctctgacattgtacaagcgaacccgtga 31117979  T
Q  309 gagatg 314  Q
    ||||||    
T  31117980 gagatg 31117985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 28034922 - 28034771
Alignment:
Q  163 ctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgct 262  Q
    |||||||  ||||||| || | ||||||| ||||||  || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  28034922 ctctatcgggaaggagtctcccagtgatgaggatgcccaggagacacggcacatcatctagtgtgatggtcatctccccaaccggtagatggaagctgct 28034823  T
Q  263 ggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    |||||| ||||||||||| |||| ||  || ||||| |||||||||||||||    
T  28034822 ggtctcctcatgccatctctctgtcatcgcacaaacaaacccgtgagagatg 28034771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 941398 - 941309
Alignment:
Q  191 ggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    |||||||  ||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||    
T  941398 ggggatgtctaggagacaagcaacatcatccagtgtgatggtcatctccccaacaggcagatggaagctgctggtctcttgatgccatct 941309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 11806629 - 11806760
Alignment:
Q  183 ctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctat 282  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||  | |||||||| ||||||   ||||||| ||||| | ||  |||||||||| |    
T  11806629 ctagtgatggggatgtgtagaagacatgccacatcatctagtgtgacagccatctccctaacaggctaatggaagctgctgatgtccacatgccatctct 11806728  T
Q  283 ctgacaaggcccaaacgaacccgtgagagatg 314  Q
     ||| ||||| |||| || |||||||||||||    
T  11806729 atgaaaaggcacaaatgagcccgtgagagatg 11806760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 34370704 - 34370807
Alignment:
Q  186 gtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctg 285  Q
    |||||||||||| ||||||| |||||||||||||||||| ||| |||||||| ||| ||| | ||||||||||| ||| | || |||||| |||| |||     
T  34370704 gtgatggggatgtttagaagtcacgccacatcatctagtttgacggtcatcttccctacatgcagatggaagttactgatttcctcatgctatctctcta 34370803  T
Q  286 acaa 289  Q
    ||||    
T  34370804 acaa 34370807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 21078937 - 21078848
Alignment:
Q  202 gaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaagg 291  Q
    |||||||||||||||||||||||||||   |||| |||||||| || |||| ||||||| ||||||   ||||| |||| ||||||||||    
T  21078937 gaagacacgccacatcatctagtgtgacaatcatatccccaacgggcagattgaagttgatggtcttcgcatgcaatctttctgacaagg 21078848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 11806486 - 11806544
Alignment:
Q  33 tcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctc 91  Q
    |||||||||||||||||||||||| || ||||||| |||| || ||||||| |||||||    
T  11806486 tcgtaacgcctcttcagtttagtgtaattgacatgagcaccacattgtttttccacctc 11806544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 27755479 - 27755559
Alignment:
Q  211 ccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaagg 291  Q
    |||||| ||||||||   |||||||| |||||||||| |||||||||||| ||||||| |||| |  ||| ||||||||||    
T  27755479 ccacattatctagtgaactggtcatccccccaacaggaagatggaagttgttggtctcctcatacattctctctgacaagg 27755559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 15423098 - 15423162
Alignment:
Q  176 gagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccc 240  Q
    |||||| ||||||||| |||||   |||||| | ||||||||||||||||||| || ||||||||    
T  15423098 gagcctactagtgatgaggatgtccagaagatatgccacatcatctagtgtgacggccatctccc 15423162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 2 - 314
Target Start/End: Original strand, 21063190 - 21063501
Alignment:
Q  2 aatcagatgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagca 101  Q
    |||||| ||||||||||||| ||||||||||| ||| | |||||||||||||   ||||||||||| |||  || |||| || ||||||| ||| |||||    
T  21063190 aatcagttgattacacctattcaagagctccttgtagcacctcttcagtttaccaaaactgacatgagcaacacattgtcttcccacctccttaacagca 21063289  T
Q  102 tcattcgctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgctta 201  Q
     | | |||| |||||  ||||||||| ||  | || ||||||||||| ||||||||||  |||||||||||||||||||| | |||||| ||||||| ||    
T  21063290 gcctccgctataaaaagtaggtcctcatgtatcatctgtatcccctcatcacgagttaactctctatcatgaaggagcctcccagtgat-gggatgccta 21063388  T
Q  202 gaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaa 301  Q
    | |||||| |||  ||||||||||||||| ||||||||| || ||||||||||||| |||||||||| | ||| ||||| | ||||| ||| ||||||||    
T  21063389 ggagacacaccatgtcatctagtgtgatgttcatctccctaataggtagatggaagatgctggtctcctgatgtcatctctgtgacagggcacaaacgaa 21063488  T
Q  302 cccgtgagagatg 314  Q
    ||||||| |||||    
T  21063489 cccgtgaaagatg 21063501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 12626864 - 12626673
Alignment:
Q  1 caatcagatgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagc 100  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||   ||||||||||  |||| ||||||| || ||||||| |||| |||    
T  12626864 caatcagctgattacacctatgcaagagctcctcgtagcgcctcttaagtttaccaaaactgacataagcaccaccttgtcttcccacctccttagaagc 12626765  T
Q  101 atcattcgctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatgg 192  Q
    | | | ||||||||||| ||||||||||||| | || ||||  ||||| ||||||||||  ||| |||||||||||||||| | ||||||||    
T  12626764 aacctccgctgtaaaatgtaggtcctcttgcatcatctgtactccctcctcacgagttaactctatatcatgaaggagcctccaagtgatgg 12626673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 38456785 - 38456614
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||| ||||| ||||  ||||||||  |||||||||| | ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  38456785 cccctcctcacgggttaactctctatcgggaaggagcctcccagtgatggggatgcccaggagacacgccacatcatctagtgtgatggtcatctcccca 38456686  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    || |||||||||||| ||| | |||| ||||||||||| |||| ||  || ||||| |||  ||||||||||    
T  38456685 actggtagatggaagctgccgatctcctcatgccatctctctgtcatcgcacaaacaaacatgtgagagatg 38456614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 13610161 - 13610071
Alignment:
Q  176 gagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtc 266  Q
    |||||| | ||||||||||||   |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  13610161 gagcctcccagtgatggggatatctagaagacacgccacatcatctagtgtgacagtcatctccccaacaggcagatggaagttgccggtc 13610071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 22516993 - 22517106
Alignment:
Q  185 agtgatggggatgcttagaagacacgccaca--tcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctat 282  Q
    ||||||||||||| |||||||||| ||||||  |||| |||||||| ||||||||||| |||||| |||||||||||| |||| || ||||| ||||| |    
T  22516993 agtgatggggatgtttagaagacatgccacacgtcat-tagtgtgacggtcatctccctaacaggaagatggaagttgttggtgtcttcatgtcatctct 22517091  T
Q  283 ctgacaaggcccaaa 297  Q
    |||||||||| ||||    
T  22517092 ctgacaaggcacaaa 22517106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 12626679 - 12626593
Alignment:
Q  225 gtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagag 311  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||||| ||||| |||  |||||||    
T  12626679 gtgatggtcatctccccaacatgtagatggaagttgctggtctcctcatgctatctctctaacaaggcacaaacaaacatgtgagag 12626593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 15825227 - 15825370
Alignment:
Q  171 tgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcat 270  Q
    |||| |||||||| |  ||||||||||  |||| ||||| |||||| ||||||||||| |||||||||||| |||    |||||||| || ||||||| |    
T  15825227 tgaatgagccttccaacgatggggatgtctagacgacacaccacattatctagtgtgacggtcatctcccccacatactgatggaagctgttggtctcct 15825326  T
Q  271 catgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    |||| ||||| || | |||||||||||| | |||||||||||||    
T  15825327 catgtcatctctcagtcaaggcccaaactaccccgtgagagatg 15825370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 8523440 - 8523529
Alignment:
Q  191 ggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    ||||||||  || ||||| || |||||||| |||||||||||||||||||||| ||| ||||||||| || ||||||| | |||||||||    
T  8523440 ggggatgccaaggagacaagcaacatcatccagtgtgatggtcatctccccaataggcagatggaagctgttggtctcctgatgccatct 8523529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 22516102 - 22516208
Alignment:
Q  185 agtgatggggatgcttagaagacacgccacatcatctagt---gtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatcta 281  Q
    ||||||||||||| |||||||||| ||||||| ||||| |   |||  |||||||| ||||||||||||||||||| |||| || || ||| |||| ||     
T  22516102 agtgatggggatgtttagaagacatgccacattatctactactgtggcggtcatcttcccaacaggtagatggaagatgctagtgtcctcaagccaactc 22516201  T
Q  282 tctgaca 288  Q
    |||||||    
T  22516202 tctgaca 22516208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 10584988 - 10584931
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaag 257  Q
    ||||||||||||||||||||||||||||   ||||||| |||||| || |||||||||    
T  10584988 tagaagacacgccacatcatctagtgtggcagtcatcttcccaacgggaagatggaag 10584931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 16782189 - 16782142
Alignment:
Q  230 ggtcatctccccaacaggtagatggaagttgctggtctcatcatgcca 277  Q
    ||||||||||||||||  |||||| |||||| ||||||||||||||||    
T  16782189 ggtcatctccccaacatatagatgaaagttgttggtctcatcatgcca 16782142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 13692902 - 13692841
Alignment:
Q  176 gagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatct 237  Q
    |||||| | ||||||||||||   |||||||||||||| ||||||||||||||  |||||||    
T  13692902 gagcctcccagtgatggggatatctagaagacacgccaaatcatctagtgtgacagtcatct 13692841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 17889 - 18059
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||||||| | ||||  ||||||||  |||||||||| | |||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||    
T  17889 cccctcgtcatgggttaactctctatcgggaaggagcctcc-agtgatggggatgcctaggagacacgccacatcatcaagtgtgagggtcatctcccca 17987  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
      |||||||||||||||||||||||| ||||||||| | |||| ||  || |||||||||||||||||||||    
T  17988 ttaggtagatggaagttgctggtctcctcatgccatttctctggcatcgcacaaacgaacccgtgagagatg 18059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 2742293 - 2742122
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||| ||||| ||||  | ||||||  |||||||||| | ||| ||||||||||  || ||||||||||||||||||||| |||||||||||||||||    
T  2742293 cccctcttcacgggttaactttctatcgggaaggagcctcccagtcatggggatgcccaggagacacgccacatcatctagtatgatggtcatctcccca 2742194  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    ||  |||||||||||||||||||||| |||||||||||||||| ||  || ||||| |||||||||||||||    
T  2742193 acccgtagatggaagttgctggtctcctcatgccatctatctgtcatcgcacaaacaaacccgtgagagatg 2742122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 13273452 - 13273281
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||| ||||| ||||  ||||||||  ||| |||||| | |||||||| |||||  || |||||||||||||||||||||||||||||||||||||||    
T  13273452 cccctcctcacgggttaactctctatcgggaatgagcctcccagtgatggagatgcccaggagacacgccacatcatctagtgtgatggtcatctcccca 13273353  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    || || ||||||||| || ||||||| ||||||||||| |||| ||  || ||||| |||||||||||||||    
T  13273352 accggcagatggaagctgttggtctcctcatgccatctctctgtcatcgcacaaacaaacccgtgagagatg 13273281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 20942989 - 20942871
Alignment:
Q  191 ggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaag 290  Q
    |||||||  ||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||||| |||| ||   || |||||| ||| |||||    
T  20942989 ggggatgtctagaagacatgccaaatcatctagtgtgacggtcatctccccaacaggcagatggaagttgttggtgtccaaataccatctctctaacaag 20942890  T
Q  291 gcccaaacgaacccgtgag 309  Q
    || |||| || ||||||||    
T  20942889 gcacaaatgatcccgtgag 20942871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 6704232 - 6704156
Alignment:
Q  204 agacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| | |||||||||    
T  6704232 agacaagccacatcatccagtgtgatggttatctccccaacaggcagatggaagctgctggtctcctgatgccatct 6704156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 24210095 - 24210136
Alignment:
Q  203 aagacacgccacatcatctagtgtgatggtcatctccccaac 244  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  24210095 aagacatgccacatcatctagtgtgatggtcatctccccaac 24210136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 2742424 - 2742386
Alignment:
Q  12 ttacacctatgcaagagctcctcgtaacgcctcttcagt 50  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  2742424 ttacacctattcaagagctcctcgtaccgcctcttcagt 2742386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 37228645 - 37228816
Alignment:
Q  143 cccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    |||||| ||||| ||||  ||||||||  |||||||||| | ||||||||| ||||  || |||||| |||||||||||||||||||| |||||||||||    
T  37228645 cccctcttcacgggttaactctctatcgggaaggagcctcccagtgatgggaatgcccaggagacacaccacatcatctagtgtgatgttcatctcccca 37228744  T
Q  243 acaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    ||  |||||||||||||||||||||| ||||||||||| |||| ||  || ||||| |||||||||||||||    
T  37228745 accagtagatggaagttgctggtctcctcatgccatctctctgtcatcgcacaaacaaacccgtgagagatg 37228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 14096281 - 14096139
Alignment:
Q  166 tatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggt 265  Q
    ||||| ||||||| || | |||||||||||||| ||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14096281 tatcaggaaggagtctcccagtgatggggatgcgtaggagac--gtcacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgcttgt 14096184  T
Q  266 ctcatcatgccatctatctgacaaggcccaaacgaacccgtgaga 310  Q
    ||| ||||||||||| |||| ||  || |||||||| ||||||||    
T  14096183 ctcctcatgccatctctctgtcatcgcacaaacgaatccgtgaga 14096139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 29370922 - 29371014
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggc 292  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||| | |||||||| ||||| ||||| | |||| ||||||||||||||||    
T  29370922 tagaacacacgacacatcatctagtgtaatggtcatctccccaacatgaagatggaacttgctagtctcttgatgcaatctatctgacaaggc 29371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 16997937 - 16997810
Alignment:
Q  171 tgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcat 270  Q
    |||| |||||||| || ||||||||||  |||||||||||||||||||||||||||||  |||||| |||| ||| | ||||||||| ||| |||||| |    
T  16997937 tgaatgagccttccagcgatggggatgtctagaagacacgccacatcatctagtgtgacagtcatcacccccacatgcagatggaagctgcaggtctcct 16997838  T
Q  271 catgccatctatctgacaaggcccaaac 298  Q
    ||| |||||| || | |||||| |||||    
T  16997837 cataccatctctcagtcaaggcacaaac 16997810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 15910645 - 15910719
Alignment:
Q  171 tgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaaca 245  Q
    |||| |||||||| || ||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||    
T  15910645 tgaatgagccttccagcgatggagatgtctagaagacacgccacatcatctagtgtgacggtcatctccccaaca 15910719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 9236990 - 9237082
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggc 292  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||||| |  ||||||||| |||||||||| | ||||||||| ||||| |||||    
T  9236990 tagaagatacgccacatcatacagtgtgatggtaatctccccaacggacagatggaagctgctggtctctttatgccatctctctgaaaaggc 9237082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 9386047 - 9385980
Alignment:
Q  213 acatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||| | |||||||||    
T  9386047 acatcatccagtgtgatggtcatctccccaataggcagatggaagctgctggtctcttgatgccatct 9385980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 314
Target Start/End: Complemental strand, 22722759 - 22722633
Alignment:
Q  188 gatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgac 287  Q
    ||||||||||   ||||||||||||| ||  |||||||||| ||| |||| ||||||| | | |||||||||||||||||| | || |||||| || | |    
T  22722759 gatggggatgtcgagaagacacgccatattgtctagtgtgacggttatcttcccaacaagcaaatggaagttgctggtctccttataccatctctccgtc 22722660  T
Q  288 aaggcccaaacgaacccgtgagagatg 314  Q
    || || ||||| | |||||||||||||    
T  22722659 aaagcacaaactagcccgtgagagatg 22722633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 7083192 - 7083103
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaa 289  Q
    ||||||||||||||||||||| |  |||| ||| ||||| ||||  || ||||| |||||| ||||||| |||||||| || ||||||||    
T  7083192 tagaagacacgccacatcatccatcgtgacggttatctctccaaatggaagatgaaagttgttggtctcctcatgccacctctctgacaa 7083103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 28837210 - 28837302
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggc 292  Q
    |||||||||||||||| | |||||||||| |  ||||| || ||| || ||||||||| ||||||| ||  |||||||||| ||| |||||||    
T  28837210 tagaagacacgccacaccgtctagtgtgacgaccatcttccgaacgggcagatggaagctgctggtatccgcatgccatctctctaacaaggc 28837302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 310
Target Start/End: Complemental strand, 35013624 - 35013501
Alignment:
Q  187 tgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctga 286  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||      
T  35013624 tgatggggatgcctaggagacacgccacatcatctagtgtgatggtcatctccccaaccggtagatggaagttgctggtctcctcatgccatctctctct 35013525  T
Q  287 caaggcccaaacgaacccgtgaga 310  Q
    ||  || ||||| |||||||||||    
T  35013524 cattgcacaaacaaacccgtgaga 35013501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 188 - 313
Target Start/End: Complemental strand, 2028974 - 2028849
Alignment:
Q  188 gatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgac 287  Q
    ||||||||||  ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||| || | |    
T  2028974 gatggggatgtctagaagacaagccacatcatctagtgtgacggtcatctcgccaacaggcagatggaagctgctggtctcctcatgccatctctcagcc 2028875  T
Q  288 aaggcccaaacgaacccgtgagagat 313  Q
    || || ||||| | ||||||||||||    
T  2028874 aaagcacaaactagcccgtgagagat 2028849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 6286686 - 6286813
Alignment:
Q  187 tgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctga 286  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||  ||||||||||| || || |||| ||||| ||||| ||||     
T  6286686 tgatggggatgcctaggagacacgccacatcatctattgtgatggtcatctccccaaccagtagatggaagctgttgatctcctcatgtcatctctctgt 6286785  T
Q  287 caaggcccaaacgaacccgtgagagatg 314  Q
    ||  || ||||| |||||||||||||||    
T  6286786 catcgcacaaacaaacccgtgagagatg 6286813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 140 - 314
Target Start/End: Original strand, 33086 - 33259
Alignment:
Q  140 tatcccctcgtcacgagttagttctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcc 239  Q
    |||||| || ||| ||||||  ||||||||| |||||||||| | ||||||||  |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  33086 tatcccttcctcatgagttaactctctatcaggaaggagcctcccagtgatggt-atgcctaggagacacgccacgtcatctagtgtgatggtcatctcc 33184  T
Q  240 ccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    ||||||||||||| ||||||| |  |||| ||||||||||||||||| |  || |||| ||| ||||||||||||    
T  33185 ccaacaggtagatcgaagttgatactctcctcatgccatctatctgatatcgcacaaaggaatccgtgagagatg 33259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 6623 - 6481
Alignment:
Q  166 tatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggt 265  Q
    ||||| ||||||| || | |||||||||||||| ||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6623 tatcaggaaggagtctcccagtgatggggatgcgtaggagac--gtcacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgcttgt 6526  T
Q  266 ctcatcatgccatctatctgacaaggcccaaacgaacccgtgaga 310  Q
    ||| ||||||||||| |||| ||  || |||||||| ||||||||    
T  6525 ctcctcatgccatctctctgtcatcgcacaaacgaatccgtgaga 6481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 32308719 - 32308861
Alignment:
Q  172 gaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatc 271  Q
    ||||||| || | |||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||  ||||||||||||||| ||||||| ||    
T  32308719 gaaggagtctcccagtgatggggatgcctaggagacacaccacatcatctagtctgatggtcatctccccaattggtagatggaagttgttggtctcctc 32308818  T
Q  272 atgccatctatctgacaaggcccaaacgaacccgtgagagatg 314  Q
    |||||||||  ||| ||  || ||||| |||||||||||||||    
T  32308819 atgccatctccctgtcatcgcacaaacaaacccgtgagagatg 32308861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 42706108 - 42706201
Alignment:
Q  192 gggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctg 285  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||||||||| ||||    
T  42706108 gggatgcctaggagacacgccacatcatctagtgtgatggtcatctccccaacaagtagaaggaagctgttggtctcctcatgccatctctctg 42706201  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 38650985 - 38650878
Alignment:
Q  176 gagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgc 275  Q
    |||||||| ||  |||||||||  || ||||||||||||||| |||||||||| | | |||||||||||||| ||||||||| |||||||||| ||||||    
T  38650985 gagccttccagcaatggggatgtctaaaagacacgccacatcgtctagtgtgacgataatctccccaacaggcagatggaagctgctggtctcctcatgc 38650886  T
Q  276 catctatc 283  Q
    ||||||||    
T  38650885 catctatc 38650878  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 13504229 - 13504360
Alignment:
Q  176 gagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgc 275  Q
    |||||| | ||| ||||||||  ||||||||||||||||||||| | | |||| ||||||||| |||||||| ||||| ||| |||| || || ||||||    
T  13504229 gagcctcccagtaatggggatatttagaagacacgccacatcatttgg-gtgacggtcatctctccaacaggcagatgaaagctgctagtgtcctcatgc 13504327  T
Q  276 catctatctgacaaggcccaaacgaacccgtga 308  Q
    ||||  ||||||||||| ||||||| |||||||    
T  13504328 catcactctgacaaggcacaaacgagcccgtga 13504360  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 31813154 - 31813213
Alignment:
Q  191 ggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtag 250  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31813154 ggggatgtgtagaagacacgccacatcatctagtgtgacggtcatctccccaacaggtag 31813213  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 632880 - 632978
Alignment:
Q  182 tctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    ||||| || |||||||  ||| ||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||  |||| |||| | |||||||||    
T  632880 tctagcgagggggatgtctaggagacaagccacatcatccagtgtgatggtcatctccctaacaggcagatggaagccgctgatctcctgatgccatct 632978  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 29907008 - 29906919
Alignment:
Q  188 gatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgcca 277  Q
    ||||||||||| |||||||||| |||||||||| |||||||    ||||||||||||| ||||||||| | || ||||||| ||||||||    
T  29907008 gatggggatgcgtagaagacacaccacatcatcgagtgtgacacccatctccccaacatgtagatggatgatgttggtctcctcatgcca 29906919  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 42749150 - 42749239
Alignment:
Q  200 tagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatctatctgacaa 289  Q
    ||||||||||| |||| |||  |||||||  |||||||||| |||| |||||||||||||| ||||||| || |||||||| ||||||||    
T  42749150 tagaagacacgtcacaccattgagtgtgacagtcatctccctaacaagtagatggaagttgttggtctcctcgtgccatctctctgacaa 42749239  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 39464627 - 39464547
Alignment:
Q  162 tctctatcatgaaggagccttctagtgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctcccca 242  Q
    ||||||||  |||||||||| | ||||||||||| ||  || |||||||||||| ||||||||| ||||||||||||||||    
T  39464627 tctctatcgggaaggagcctcccagtgatggggaagcccaggagacacgccacaccatctagtgggatggtcatctcccca 39464547  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 19811751 - 19811685
Alignment:
Q  214 catcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||| || |||||||  ||||||||||    
T  19811751 catcatctagtgtaatggtcaactccccaacaggaagatggaagatgttggtctctgcatgccatct 19811685  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 19828576 - 19828510
Alignment:
Q  214 catcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgccatct 280  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| || | |||||  ||||||||||    
T  19828576 catcatctagtgtgatggtcaactccccaacaggaagatggaagatgttagtctctgcatgccatct 19828510  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 51354213 - 51354151
Alignment:
Q  205 gacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtct 267  Q
    |||||| ||||||||| |||||||| | |||||||||| || | |||||||||||| ||||||    
T  51354213 gacacgtcacatcatccagtgtgataggcatctccccatcaaggagatggaagttgttggtct 51354151  T

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Target: scaffold0018 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 181096 - 181273
Alignment:
Q  1 caatcagatgattacacctatgcaagagctcctcgtaacgcctcttcagtttagtgaaactgacatgtgcactaccttgttttgccacctctttagcagc 100  Q
    ||||||| |||||||||||||| || ||||||||||| |||||||||||||||   ||||||||||| |||  ||||| | || ||||||| |||| |||    
T  181096 caatcagctgattacacctatgaaatagctcctcgtagcgcctcttcagtttaccaaaactgacatgagcagcaccttatcttcccacctccttagtagc 181195  T
Q  101 atcattcgctgtaaaatataggtcctcttgcttgatatgtatcccctcgtcacgagttagttctctatcatgaaggag 178  Q
    | | | |  |||||||  ||||||||| | | | || ||||||||||| |||| |||||  |||||||||||||||||    
T  181196 aacctccattgtaaaaagtaggtcctcctacatcatttgtatcccctcctcacaagttaactctctatcatgaaggag 181273  T

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Target: scaffold0103 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 14483 - 14393
Alignment:
Q  187 tgatggggatgcttagaagacacgccacatcatctagtgtgatggtcatctccccaacaggtagatggaagttgctggtctcatcatgcca 277  Q
    |||||||||||  |||||||||| | |||| ||| ||||||| |||||||||||||||| |||||||||||||| ||||||| | ||||||    
T  14483 tgatggggatgtgtagaagacacacgacattatcgagtgtgaaggtcatctccccaacatgtagatggaagttgttggtctccttatgcca 14393  T

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