View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6900_low_35 (Length: 329)
Name: NF6900_low_35
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 45459137 - 45459439
Alignment:
| Q |
13 |
aatattcaaaatgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45459137 |
aatattcaaaatgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacata |
45459236 |
T |
|
| Q |
113 |
acaaaaatattgtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45459237 |
acaaaaatattgtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacag |
45459336 |
T |
|
| Q |
213 |
ttcttgcagtcgataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45459337 |
ttcttgcagtcgataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttga |
45459436 |
T |
|
| Q |
313 |
tgt |
315 |
Q |
| |
|
||| |
|
|
| T |
45459437 |
tgt |
45459439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University