View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_36 (Length: 328)
Name: NF6900_low_36
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 18332527 - 18332229
Alignment:
| Q |
16 |
agtagagccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattc |
115 |
Q |
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| T |
18332527 |
agtagagccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaa-ctcctattc |
18332429 |
T |
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| Q |
116 |
tgttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagcgggagaatgtatgctggaatcggatgaattatggaa |
215 |
Q |
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| T |
18332428 |
tgttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagtaggagaatgtatgctggaagcggaggaattactgaa |
18332329 |
T |
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| Q |
216 |
aatgcgacaaactatcacaaatatttatgtacaaagaacaggcaaagcttattggcagatatacaaagacatggaaagggattgttttatgtcagcagaa |
315 |
Q |
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| T |
18332328 |
aatgcgaaaaactatcacaaatatttatgcacaaagaacaggcaaagcttcctggcagatatacagagacatggagcgggatctttttatgtcagcagaa |
18332229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 29800464 - 29800176
Alignment:
| Q |
23 |
ccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttaga |
122 |
Q |
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| T |
29800464 |
ccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttaga |
29800365 |
T |
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| Q |
123 |
ctctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagcgggagaatgtatgctggaatcggatgaattatggaaaatgcga |
222 |
Q |
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| T |
29800364 |
ctctcagctcagggtaatgatccatcaacttgctacttctttgtatgagggacaagtaggagaatgtatgctggaagcggaggaattactgaaaatgcga |
29800265 |
T |
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| Q |
223 |
caaactatcacaaatatttatgtacaaagaacaggcaaagcttattggcagatatacaaagacatggaaagggattgttttatgtcagc |
311 |
Q |
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| T |
29800264 |
aaaactattacaaatatttatgcacaaagaacaggcaaagcttcctggcagatatacagagacatggagcgggatctttttatgtcagc |
29800176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 137 - 315
Target Start/End: Original strand, 2399078 - 2399259
Alignment:
| Q |
137 |
taatgatccatcaa-cctgctacttctttgtatgagggacaagcgggagaatgtatgctggaatcggatgaattatggaaaatgcg--acaaactatcac |
233 |
Q |
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| T |
2399078 |
taatgatccattaaacctaccacttctttgtatgagggacaagcaggagaatgtatgcttgaagcgaatgaattactgaaaatgcgaaaaaaactatatc |
2399177 |
T |
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| Q |
234 |
aaatatttatgtacaaagaacaggcaaagcttattggcagatatacaaagacatggaaagggattgttttatgtcagcagaa |
315 |
Q |
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| T |
2399178 |
aaatatttatgtacaaagaatgagcaaactttcatggcagatatacaaagacttgaaaagggatctttatatgtcagcagaa |
2399259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 258
Target Start/End: Complemental strand, 7959024 - 7958872
Alignment:
| Q |
102 |
aaaaactcctattctgttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagcgggagaatgtatgctggaatcg |
201 |
Q |
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| T |
7959024 |
aaaaacccctattctgttagactctcaggg--gggtaatgatccaccaacctgctacttctttgtatgagggacaa---ggagattgtatgctggaagca |
7958930 |
T |
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| Q |
202 |
gatgaattatggaaaatgcg-acaaactatcacaaatatttatgtacaaagaacaggc |
258 |
Q |
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| T |
7958929 |
aatgaattactgaaaatgcgaaaaaactatgacaaatatttatgcacaaagaacaggc |
7958872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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