View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_48 (Length: 279)

Name: NF6900_low_48
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_48
NF6900_low_48
[»] chr2 (12 HSPs)
chr2 (131-271)||(24699464-24699604)
chr2 (131-271)||(24690113-24690253)
chr2 (130-271)||(18973053-18973194)
chr2 (131-264)||(19884336-19884469)
chr2 (69-130)||(1752593-1752654)
chr2 (130-248)||(40386969-40387087)
chr2 (129-248)||(40390169-40390288)
chr2 (131-256)||(18981280-18981407)
chr2 (130-243)||(21068257-21068369)
chr2 (131-171)||(17333892-17333932)
chr2 (1-49)||(45087813-45087862)
chr2 (3-46)||(24575270-24575314)
[»] chr4 (7 HSPs)
chr4 (130-271)||(8657547-8657688)
chr4 (133-248)||(18483200-18483315)
chr4 (206-258)||(22175777-22175829)
chr4 (191-243)||(47522534-47522586)
chr4 (1-46)||(14605733-14605779)
chr4 (1-46)||(6516721-6516766)
chr4 (70-122)||(20055880-20055932)
[»] scaffold1699 (1 HSPs)
scaffold1699 (131-271)||(1290-1430)
[»] chr1 (11 HSPs)
chr1 (131-271)||(51967950-51968090)
chr1 (131-271)||(15473772-15473912)
chr1 (69-128)||(12795087-12795146)
chr1 (130-243)||(44910893-44911007)
chr1 (131-234)||(28425165-28425269)
chr1 (194-243)||(19763292-19763341)
chr1 (1-34)||(25449382-25449415)
chr1 (206-258)||(2335996-2336048)
chr1 (3-34)||(7309041-7309072)
chr1 (133-243)||(20521314-20521424)
chr1 (1-34)||(44824548-44824581)
[»] scaffold0043 (1 HSPs)
scaffold0043 (133-271)||(33135-33273)
[»] chr6 (11 HSPs)
chr6 (130-271)||(22232502-22232642)
chr6 (131-271)||(3917492-3917632)
chr6 (131-254)||(18909125-18909248)
chr6 (131-248)||(14779901-14780019)
chr6 (131-230)||(21750621-21750720)
chr6 (194-271)||(7245400-7245477)
chr6 (1-34)||(19833854-19833887)
chr6 (1-34)||(21617504-21617537)
chr6 (191-243)||(19169166-19169218)
chr6 (1-49)||(24717682-24717733)
chr6 (208-248)||(27616515-27616555)
[»] scaffold0301 (1 HSPs)
scaffold0301 (131-271)||(8949-9089)
[»] chr7 (15 HSPs)
chr7 (131-271)||(46461989-46462129)
chr7 (130-271)||(43005563-43005703)
chr7 (131-271)||(44413206-44413346)
chr7 (130-235)||(18157257-18157362)
chr7 (195-271)||(7528774-7528850)
chr7 (131-182)||(23443600-23443651)
chr7 (1-46)||(4820724-4820769)
chr7 (130-243)||(11578850-11578962)
chr7 (131-170)||(15820471-15820510)
chr7 (131-169)||(8913485-8913523)
chr7 (131-243)||(9019352-9019465)
chr7 (227-271)||(18157029-18157073)
chr7 (198-248)||(8913406-8913456)
chr7 (128-157)||(12583625-12583654)
chr7 (1-45)||(13034727-13034772)
[»] chr3 (17 HSPs)
chr3 (130-251)||(35491055-35491176)
chr3 (131-243)||(17218047-17218159)
chr3 (69-128)||(27444804-27444863)
chr3 (135-271)||(37468052-37468190)
chr3 (131-243)||(14282140-14282252)
chr3 (206-258)||(37470213-37470265)
chr3 (131-248)||(15619696-15619812)
chr3 (191-243)||(14252460-14252512)
chr3 (206-258)||(49967428-49967480)
chr3 (131-250)||(44363408-44363522)
chr3 (130-248)||(15627043-15627160)
chr3 (129-171)||(16017486-16017528)
chr3 (1-46)||(52283035-52283081)
chr3 (1-34)||(5212818-5212851)
chr3 (1-49)||(40799127-40799176)
chr3 (131-183)||(16014102-16014153)
chr3 (191-243)||(23288075-23288127)
[»] scaffold0119 (1 HSPs)
scaffold0119 (131-271)||(40096-40236)
[»] chr5 (6 HSPs)
chr5 (136-271)||(30249351-30249484)
chr5 (133-248)||(13358439-13358554)
chr5 (131-248)||(22704486-22704602)
chr5 (186-249)||(38227822-38227885)
chr5 (128-157)||(15394824-15394853)
chr5 (1-45)||(21100603-21100648)
[»] scaffold0031 (1 HSPs)
scaffold0031 (131-256)||(33646-33771)
[»] chr8 (8 HSPs)
chr8 (135-216)||(13385688-13385768)
chr8 (131-248)||(28277349-28277466)
chr8 (1-46)||(36104578-36104623)
chr8 (131-171)||(27808608-27808648)
chr8 (197-243)||(23816631-23816677)
chr8 (131-169)||(24655368-24655406)
chr8 (191-256)||(20733220-20733284)
chr8 (1-49)||(45539356-45539405)
[»] scaffold0290 (1 HSPs)
scaffold0290 (131-243)||(7476-7588)
[»] scaffold0343 (2 HSPs)
scaffold0343 (131-272)||(4566-4707)
scaffold0343 (131-272)||(4774-4915)
[»] scaffold0022 (1 HSPs)
scaffold0022 (149-256)||(148913-149020)
[»] scaffold0555 (1 HSPs)
scaffold0555 (142-247)||(5218-5323)
[»] scaffold0323 (1 HSPs)
scaffold0323 (131-243)||(17673-17784)
[»] scaffold0002 (1 HSPs)
scaffold0002 (131-243)||(362808-362920)
[»] scaffold0058 (1 HSPs)
scaffold0058 (135-249)||(73275-73389)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-46)||(2694-2739)
[»] scaffold0439 (1 HSPs)
scaffold0439 (1-34)||(7534-7567)
[»] scaffold0420 (1 HSPs)
scaffold0420 (131-171)||(10899-10939)
[»] scaffold0029 (1 HSPs)
scaffold0029 (206-258)||(38012-38064)
[»] scaffold0205 (1 HSPs)
scaffold0205 (1-46)||(777-823)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-46)||(211599-211645)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-34)||(24601-24634)
[»] scaffold0582 (1 HSPs)
scaffold0582 (208-248)||(318-358)
[»] scaffold0280 (1 HSPs)
scaffold0280 (1-49)||(3508-3556)
[»] scaffold0132 (1 HSPs)
scaffold0132 (129-157)||(24299-24327)
[»] scaffold0050 (1 HSPs)
scaffold0050 (191-243)||(41218-41270)
[»] scaffold0032 (1 HSPs)
scaffold0032 (191-243)||(29066-29118)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 24699464 - 24699604
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  24699464 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattctcttgcttttcagagaaaaattcggcagaaaggtattt 24699563  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  24699564 taaaatacctcatctttgtaccgattccgacccttcttctc 24699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 24690113 - 24690253
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||| ||||    
T  24690113 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattctcttgcttttcagagaaaaattcggcaaaaaggtattt 24690212  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  24690213 taaaatacctcatctttgtaccgattccgacccttcttctc 24690253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 18973194 - 18973053
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||    
T  18973194 ctgtcataccccaatttttgaccaaagaatctacattcatacaccatctgacccataatattcttagacttttcagagaaaaattcggcagaaaggtatt 18973095  T
Q  230 ttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||||| |||||||||||||||||||  ||| ||||||||    
T  18973094 ttaaaatacctcatctttgtaccgattctgacctttcttctc 18973053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 264
Target Start/End: Complemental strand, 19884469 - 19884336
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||||| | ||||| ||| |||||||| ||||    
T  19884469 tgtcaaacctcaatttttgacctaaaaacttacattcatacaccctatgatccaaaatattctctgacttttcaaaaaaaaaatcgacagaaaggtattt 19884370  T
Q  231 taaaatatctcatctttgtaccgattcccaccct 264  Q
    ||||||| |||||||||||||||||||| |||||    
T  19884369 taaaatacctcatctttgtaccgattccgaccct 19884336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 1752593 - 1752654
Alignment:
Q  69 ccttccttggtgaaataagcttcgatgcggctgtaccatgctcgtggtgcttgtttaaggcc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1752593 ccttccttggtgaaataagcttcgatgcggctgtaccatgctcgtggtgcttgtttaaggcc 1752654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 40387087 - 40386969
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||||||||| |   |||||| || |||||||||||||||||||||| ||| ||  | |    
T  40387087 ctgtcataccccaattttttacctaagaccctacatttatacaccctctgatctggaatattatccgacttttcagagaaaaattcggtagagagatact 40386988  T
Q  230 ttaaaatatctcatctttg 248  Q
    |||||||| ||||| ||||    
T  40386987 ttaaaatacctcatttttg 40386969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 40390288 - 40390169
Alignment:
Q  129 cctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaat 228  Q
    |||||||| ||||||||||| || ||||| |||| ||||||||| ||||||| ||| |||||| |||||||||| ||| |||||||||||||| ||  |     
T  40390288 cctgtcattccccaattttttacgtaagatcctatattcatacatcctctgatccaaaatattatctgactttttagataaaaattcggcagagagatac 40390189  T
Q  229 tttaaaatatctcatctttg 248  Q
    ||||||||| ||||| ||||    
T  40390188 tttaaaatacctcatttttg 40390169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 18981407 - 18981280
Alignment:
Q  131 tgtcataccccaatttttgacct--aagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaat 228  Q
    ||||||||| |||||||||||||  |||| ||||||||||||| || | |||| |  |||||||| ||| ||||||||||||||||| | ||||||  ||    
T  18981407 tgtcatacctcaatttttgacctctaagatcctacattcatacgccttttgacactgaatattctttgatttttcagagaaaaattcagtagaaagttat 18981308  T
Q  229 tttaaaatatctcatctttgtaccgatt 256  Q
    ||||||||| ||||| ||| | ||||||    
T  18981307 tttaaaatacctcatttttattccgatt 18981280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 21068257 - 21068369
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    |||||||||||||||||||||||||||  || |||||||||| || | ||||||  |  | || |||| ||||||| ||||||||| ||||||||| |||    
T  21068257 ctgtcataccccaatttttgacctaaggtcc-acattcatacgccttttgaccctgatcaatccctgatttttcagtgaaaaattcagcagaaaggtatt 21068355  T
Q  230 ttaaaatatctcat 243  Q
    |||||||| |||||    
T  21068356 ttaaaatacctcat 21068369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 17333932 - 17333892
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatac 171  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  17333932 tgtcataccccaatttttgacctaagaccctacattcatac 17333892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45087813 - 45087862
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaagaaa 49  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||||||    
T  45087813 tctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaa 45087862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 24575314 - 24575270
Alignment:
Q  3 tgcttctgatcagtgttttcag-ttaggagaaattgaataaaaag 46  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||    
T  24575314 tgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaag 24575270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 8657547 - 8657688
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||| ||||| |||    
T  8657547 ctgtcataccccaatttttgacctaagaacctacattcatacaccctttgacccataatattctctggctttttagaaaaaaattcggcataaaggtatt 8657646  T
Q  230 ttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  8657647 ttaaaatacctcatctttgtaccgattccgacccttcttctc 8657688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 18483315 - 18483200
Alignment:
Q  133 tcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatttta 232  Q
    ||||||| |||||||| |||||||| ||||| ||||||||| |||| | ||  || ||||| |||||||||| |||||| |||| |||| |||  ||||     
T  18483315 tcatacctcaattttttacctaagatcctactttcatacactctcttatccgaaaaattctttgacttttcaaagaaaatttcgacagataggtcttttg 18483216  T
Q  233 aaatatctcatctttg 248  Q
    ||||||||||| ||||    
T  18483215 aaatatctcatttttg 18483200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 22175829 - 22175777
Alignment:
Q  206 agaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcc 258  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||| |||||    
T  22175829 agaaaaattcggcagagaggtattttaaaatacctcatctttgtaccaattcc 22175777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 47522586 - 47522534
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    ||||||| ||||||| |||||||||||||| |||| ||||||||||| |||||    
T  47522586 tctctgatttttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 47522534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14605733 - 14605779
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaag 46  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||    
T  14605733 tctgcttctgatcagtgttttcagcttaggagaaaacgaataaaaag 14605779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6516766 - 6516721
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaattgaataaaaag 46  Q
    ||||||||||||| || |||||||||||||||||  ||||||||||    
T  6516766 tctgcttctgatctgtattttcagttaggagaaaaagaataaaaag 6516721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 20055880 - 20055932
Alignment:
Q  70 cttccttggtgaaataagcttcgatgcggctgtaccatgctcgtggtgcttgt 122  Q
    |||||||||||||||| || | ||||| |||| || |||||||||||||||||    
T  20055880 cttccttggtgaaataggcctagatgcagctgaacaatgctcgtggtgcttgt 20055932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1699 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 1430 - 1290
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  1430 tgtcataccccaattttttacctaagaacctacattcatacaccctctaacccataatattctctggctttttagagaaaaattcggcagaaaggtattt 1331  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||| || |||||||||||||||||||| ||||||||||||    
T  1330 taaattacctcatctttgtaccgattccgacccttcttctc 1290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 51967950 - 51968090
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  51967950 tgtcataccccaattttttacctaagaacctacattcatacaccctctgacccataatattctctggcttttcaaagaaaaattcggcagaaaggtattt 51968049  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||| |||||||||||||||||||  ||| ||||||||    
T  51968050 taaaatacctcatctttgtaccgattctgaccattcttctc 51968090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 15473912 - 15473772
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  15473912 tgtcataccccaatttttgacctaagagcatacattcatacaccctctgacccataatattctcgagcttttcagagaaaaattcggcagaaaggtattt 15473813  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||||  ||||||||||||||||||| ||||||||||||    
T  15473812 taaaatacttcatctttgtaccgattccgacccttcttctc 15473772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 12795146 - 12795087
Alignment:
Q  69 ccttccttggtgaaataagcttcgatgcggctgtaccatgctcgtggtgcttgtttaagg 128  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  12795146 ccttcctttgtgaaataggcttcaatgcggctgtaccatgctcgtggtgcctgtttaagg 12795087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 44911007 - 44910893
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatat-tctctgacttttcagagaaaaattcggcagaaaggaat 228  Q
    ||||||||  ||||||||| ||||||||||| ||||||||||||| | |||| |  | ||| ||| ||||||||  || |||||||||||||| ||| ||    
T  44911007 ctgtcatattccaattttttacctaagaacccacattcatacaccgtttgacactgattatgtctttgactttttcgaaaaaaattcggcagagaggtat 44910908  T
Q  229 tttaaaatatctcat 243  Q
    ||||||||| |||||    
T  44910907 tttaaaatacctcat 44910893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 28425165 - 28425269
Alignment:
Q  131 tgtcataccccaatttttgacct-aagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||||||| |||  ||||||||||| | || | ||||||  |  | |||||||||||| |||||||||| ||||||| ||| |||    
T  28425165 tgtcataccccaatttttgaccttaaggtcctacattcatgcgccgtttgaccctgatcagtctctgactttttagagaaaaatccggcagagaggtatt 28425264  T
Q  230 ttaaa 234  Q
    |||||    
T  28425265 ttaaa 28425269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 19763341 - 19763292
Alignment:
Q  194 ctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||| |||||    
T  19763341 ctgacttttcagtgaaaaattcggcagataggtattttaaaatacctcat 19763292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25449382 - 25449415
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  25449382 tctgcttctgatcagtgttttcagttaggagaaa 25449415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 2336048 - 2335996
Alignment:
Q  206 agaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcc 258  Q
    ||||||||||| |||| ||| ||||||||||| |||||||||||||| |||||    
T  2336048 agaaaaattcgacagagaggtattttaaaatacctcatctttgtaccaattcc 2335996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 7309072 - 7309041
Alignment:
Q  3 tgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  7309072 tgcttctgatcagtgttttcagttaggagaaa 7309041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 20521424 - 20521314
Alignment:
Q  133 tcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatttta 232  Q
    ||||||||||||||||||||||||| | |||||||||    | | ||| ||  |  | || ||| |||||||| ||||||||||||| ||||| ||||||    
T  20521424 tcataccccaatttttgacctaagatcatacattcatgtgtcatttgatcctgatcagtccctgtcttttcagtgaaaaattcggcataaaggtatttta 20521325  T
Q  233 aaatatctcat 243  Q
    ||||| |||||    
T  20521324 aaatacctcat 20521314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44824548 - 44824581
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  44824548 tctgcttctgatctgtgttttcagttaggagaaa 44824581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 33273 - 33135
Alignment:
Q  133 tcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatttta 232  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||    
T  33273 tcataccccaacttatgacctaagaacctacattcatacaccctctgacccataatattctctggcttttcagagaaaaattcggcagaaaagtatttta 33174  T
Q  233 aaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||  ||||||||||||||||||| ||||||||||||    
T  33173 aaatacttcatctttgtaccgattccgacccttcttctc 33135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 22232642 - 22232502
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||    
T  22232642 ctgtcataccccaatttttaacctaagaacctacattcatacaccctctgacccataatattctctg-gttttcagagaaacattcggcagaaaggtatt 22232544  T
Q  230 ttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||||| |||||||||||||||||||| || |||||||||    
T  22232543 ttaaaatacctcatctttgtaccgattccgactcttcttctc 22232502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 3917632 - 3917492
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  3917632 tgtcataccccaatttttaacctaagaacctacattcatacaccctctaacccataatattctctggcttttcagagaaaaattcggcataaaggtattt 3917533  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||| ||||||||| |||| ||||| ||||||||||||    
T  3917532 taaaatacctcatctttataccaattccgacccttcttctc 3917492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 18909125 - 18909248
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| | ||||    
T  18909125 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccaaaatattctttggcttttcagagaaaaattcggcagaaatgtattt 18909224  T
Q  231 taaaatatctcatctttgtaccga 254  Q
    ||||||| ||||||||| ||||||    
T  18909225 taaaatacctcatctttataccga 18909248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 14780019 - 14779901
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccc-tctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| | | |||   |  | |||| ||||||||||  |||||||||||||| ||| |||    
T  14780019 tgtcatacaccaatttttgacctaaggacctacattcatacacccttttaacctcgacgagtctcagacttttcagtaaaaaattcggcagagaggtatt 14779920  T
Q  230 ttaaaatatctcatctttg 248  Q
    |||||||| ||||| ||||    
T  14779919 ttaaaatacctcatttttg 14779901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 21750720 - 21750621
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||||| || |||||||||  ||   |||||| |   | ||||||| ||||||||||||||||||||| ||||| ||||    
T  21750720 tgtcataccccaatttttgacctaagaccccacattcatatgccagttgacccttttgagtctctgatttttcagagaaaaattcggcaaaaaggtattt 21750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 7245477 - 7245400
Alignment:
Q  194 ctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||||||||| |||||||||| |||  ||| |||||||||||  |||||| | |||||||||| |||| |||||||    
T  7245477 ctgacttttcagtgaaaaattcgacagggaggtattttaaaatacatcatctatataccgattccaacccctcttctc 7245400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 19833854 - 19833887
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  19833854 tctgcttctgatcagtgttttcagttaggagaaa 19833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21617537 - 21617504
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  21617537 tctgcttctgatctgtgttttcagttaggagaaa 21617504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 19169166 - 19169218
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    |||||| |||||||| ||||||||||||||| ||| ||||| ||||| |||||    
T  19169166 tctctgtcttttcagtgaaaaattcggcagagaggtattttgaaatacctcat 19169218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24717682 - 24717733
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggag--aaattgaataaaaagaaa 49  Q
    |||||||||||||||||||||||| |||||||  |||||||| |||||||||    
T  24717682 tctgcttctgatcagtgttttcagcttaggagaaaaattgaagaaaaagaaa 24717733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 27616515 - 27616555
Alignment:
Q  208 aaaaattcggcagaaaggaattttaaaatatctcatctttg 248  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  27616515 aaaaattcggcagaaaggtattttaaaatacctcatatttg 27616555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 8949 - 9089
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  8949 tgtcatatcctaatttttgacttaagaacctacattcatacaccctctgacccataatattccctggcttttcggagaaaaattcggcagaaaggtattt 9048  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  9049 taaaatacctcatctttgtaccgattccgacccttcttctc 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 46462129 - 46461989
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  46462129 tgtcataccccaattttttacctaagaacctagattcatacaccctttgacctataatattctctggcttttcagagaaaaattcggcagaaaggtattt 46462030  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||| |||||||||||||||||||| ||||| ||||||    
T  46462029 taaaatacctcatctttgtaccgattccgaccctccttctc 46461989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 43005703 - 43005563
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||| || |||||||||||||||||| |||    
T  43005703 ctgtcataccccaattttttacctaagaacctacattcatacaccctctgacccaaaatattctttggcttttc-gaaaaaaattcggcagaaaggtatt 43005605  T
Q  230 ttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||||||| |||||||||||||||||||| |||| |||||||    
T  43005604 ttaaaatacctcatctttgtaccgattccgacccctcttctc 43005563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 44413346 - 44413206
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||    
T  44413346 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctatggctttttagagaaaaattcggcagtaaggtattt 44413247  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||  |||||||||||||| ||||  ||| ||||||||    
T  44413246 taaaatccctcatctttgtaccaattctgacctttcttctc 44413206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 18157362 - 18157257
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  18157362 ctgtcataccccagtttttgacctaagaacctacattcatacaccctctgacccataatattctctggcttttcagagaaaaattcggcagaaaggtatt 18157263  T
Q  230 ttaaaa 235  Q
    ||||||    
T  18157262 ttaaaa 18157257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 7528850 - 7528774
Alignment:
Q  195 tgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||||||| ||||||||| ||||  ||| ||||||||||| |||||||||||||||||||| |||| |||||||    
T  7528850 tgacttttcagtgaaaaattcagcagggaggtattttaaaatacctcatctttgtaccgattccgacccctcttctc 7528774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 23443600 - 23443651
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacc 182  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| |||||    
T  23443600 tgtcataccccaatttttgacctaagaccctacattcatacgccctttgacc 23443651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4820769 - 4820724
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaattgaataaaaag 46  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||    
T  4820769 tctgcttctgattagtgttttcagttatgagaaattgaataaaaag 4820724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 11578850 - 11578962
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    |||||||||| || ||||||||| |||| || || |||||||   || ||||||  |||||||| || ||||||| |||||||||||||||| ||| |||    
T  11578850 ctgtcataccaca-tttttgaccgaagatcccactttcatacgttctttgacccgaaatattctttggcttttcaaagaaaaattcggcagagaggtatt 11578948  T
Q  230 ttaaaatatctcat 243  Q
    |||||||| |||||    
T  11578949 ttaaaatacctcat 11578962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 15820471 - 15820510
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcata 170  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15820471 tgtcataccccaatttttgacctaagaccctacattcata 15820510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 8913523 - 8913485
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcat 169  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  8913523 tgtcataccccaatttttgacctaagatcctacattcat 8913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 9019465 - 9019352
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacct-acattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    |||||||||||||| ||||||||||| |||| ||||||||||    | ||| |   |||| ||||||||||||||||||||| || |||||| | | |||    
T  9019465 tgtcataccccaatctttgacctaaggaccttacattcatacgtagtttgatcatgaatagtctctgacttttcagagaaaattttggcagagatgtatt 9019366  T
Q  230 ttaaaatatctcat 243  Q
    |||||||| |||||    
T  9019365 ttaaaatacctcat 9019352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 18157073 - 18157029
Alignment:
Q  227 attttaaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||    
T  18157073 attttaaaatgcctcatctttgtaccgattccgacccttcttctc 18157029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 8913456 - 8913406
Alignment:
Q  198 cttttcagagaaaaattcggcagaaaggaattttaaaatatctcatctttg 248  Q
    |||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||    
T  8913456 cttttcagtgaaaaattcggcagagaggtattttaaaatacctcatttttg 8913406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 12583625 - 12583654
Alignment:
Q  128 gcctgtcataccccaatttttgacctaaga 157  Q
    ||||||||||||||||||||||||||||||    
T  12583625 gcctgtcataccccaatttttgacctaaga 12583654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13034727 - 13034772
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaa 45  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||    
T  13034727 tctgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaa 13034772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 35491055 - 35491176
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| | |||    
T  35491055 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacctagaatattctctggcttttcagagaaaaattcggcagaaaagtatt 35491154  T
Q  230 ttaaaatatctcatctttgtac 251  Q
    |||||||| |||||||||||||    
T  35491155 ttaaaatacctcatctttgtac 35491176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 17218159 - 17218047
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||| | ||||||||||||| || ||||||||  |||| ||| | |||||||| || ||| ||| ||||||||| ||||    
T  17218159 tgtcataccccaatttttgacctaacaccctacattcatacgccgtctgaccctgaatagtctttaacttttcaaaggaaatttcagcagaaaggtattt 17218060  T
Q  231 taaaatatctcat 243  Q
    ||||||| |||||    
T  17218059 taaaatacctcat 17218047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 27444863 - 27444804
Alignment:
Q  69 ccttccttggtgaaataagcttcgatgcggctgtaccatgctcgtggtgcttgtttaagg 128  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  27444863 ccttcctttgtgaaataggcttcaatgcggctgtaccatgctcgtggtgcctgtttaagg 27444804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 271
Target Start/End: Original strand, 37468052 - 37468190
Alignment:
Q  135 ataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcag--agaaaaattcggcagaaaggaatttta 232  Q
    ||||| ||||||||||| ||||||| || |||||||||||||||||   | |||||| | || |||||  |  | ||||| ||| |||||||| ||||||    
T  37468052 atacctcaatttttgacttaagaacttatattcatacaccctctgatttagaatattttttggctttttgggaaaaaaaaatcgacagaaaggtatttta 37468151  T
Q  233 aaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    ||||| ||||| |||||||||||||| |||| |||||||    
T  37468152 aaatacctcatttttgtaccgattccgacccatcttctc 37468190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 14282140 - 14282252
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||||| |||||||| ||||  |  ||  ||| ||||||| ||||||  |||||||| |||||||||| |||||| ||||| ||| ||| ||||    
T  14282140 tgtcataccccattttttgacataaggtcacactctcacacaccctttgacccgcaatattctttgacttttcaaagaaaatttcggtagagaggtattt 14282239  T
Q  231 taaaatatctcat 243  Q
    ||||||| |||||    
T  14282240 taaaatacctcat 14282252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 37470213 - 37470265
Alignment:
Q  206 agaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcc 258  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||| |||||    
T  37470213 agaaaaattcggcagagaggtattttaaaatacctcatctttgtaccaattcc 37470265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 15619696 - 15619812
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||||  || |||||||||  || | |||||   |  | |||||||| |||||  ||||||||||||||| ||| ||||    
T  15619696 tgtcataccccaatttttgacctaaggtcc-acattcatatgccttttgaccttgatcagtctctgacatttcaatgaaaaattcggcagagaggtattt 15619794  T
Q  231 taaaatatctcatctttg 248  Q
    ||||||| ||||| ||||    
T  15619795 taaaatacctcatttttg 15619812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 14252460 - 14252512
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    ||||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||    
T  14252460 tctctgatttttcagtgaaaaattcggcagagaggtattttaaaatacctcat 14252512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 49967428 - 49967480
Alignment:
Q  206 agaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcc 258  Q
    |||||||||||||||| ||| |||||||||||  ||||||||||||| |||||    
T  49967428 agaaaaattcggcagagaggtattttaaaatacatcatctttgtaccaattcc 49967480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 44363522 - 44363408
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||||| |||||||||| ||||| |||||||||||||  | | ||||||  ||||     ||| |||| |||||||||||| ||| | ||| ||||    
T  44363522 tgtcataccctaatttttgacttaagatcctacattcatacttcttttgaccctgaata-----tgaatttttagagaaaaattcagcatagaggtattt 44363428  T
Q  231 taaaatatctcatctttgta 250  Q
    ||||||| ||||| ||||||    
T  44363427 taaaatacctcatttttgta 44363408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 15627043 - 15627160
Alignment:
Q  130 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatt 229  Q
    ||||||||||||||||||| |||||||  || |||||||||  || | |||||   |  | |||||||| |||||  ||||||||||||||| ||| |||    
T  15627043 ctgtcataccccaattttttacctaaggtcc-acattcatatgccttttgaccttgatcagtctctgacatttcaatgaaaaattcggcagagaggtatt 15627141  T
Q  230 ttaaaatatctcatctttg 248  Q
    |||||||| ||||| ||||    
T  15627142 ttaaaatacctcatttttg 15627160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 16017528 - 16017486
Alignment:
Q  129 cctgtcataccccaatttttgacctaagaacctacattcatac 171  Q
    ||||||||||| ||||||||||||||||| || ||||||||||    
T  16017528 cctgtcataccacaatttttgacctaagaccccacattcatac 16017486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52283081 - 52283035
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaag 46  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||    
T  52283081 tctgcttctgatcagtgttttcagcttaggagaaaaagaataaaaag 52283035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5212851 - 5212818
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  5212851 tctgcttctgatctgtgttttcagttaggagaaa 5212818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40799176 - 40799127
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaagaaa 49  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||||||    
T  40799176 tctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaa 40799127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 16014102 - 16014153
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgaccc 183  Q
    |||||||| ||||||||||||||||| | |||||||||||| |||| ||||||    
T  16014102 tgtcatactccaatttttgacctaagga-ctacattcatacgccctttgaccc 16014153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 23288127 - 23288075
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    ||||||| ||||||| ||||||||||||||  ||| ||||||||||| |||||    
T  23288127 tctctgatttttcagtgaaaaattcggcagggaggtattttaaaatacctcat 23288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 40236 - 40096
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||||| |||||||||||||||||||||| ||||    
T  40236 tgtcatactccaatttttgacctaagaacctacattcatacaccctttgatccagaatattcactggctttttagagaaaaattcggcagaaaggtattt 40137  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctc 271  Q
    |||| || ||||||||||||| |||||| |||  |||||||    
T  40136 taaagtacctcatctttgtacggattccgacctctcttctc 40096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 30249351 - 30249484
Alignment:
Q  136 taccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattttaaaa 235  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| || |||||||||||  |||||  | ||||| |||||||||| | |||||||||    
T  30249351 taccccaatttttgacctaggaacctacattcatacaccgtctgactcagaatattctctggtttttc--aaaaaaaatcggcagaaaagtattttaaaa 30249448  T
Q  236 tatctcatctttgtaccgattcccacccttcttctc 271  Q
    || |||||||||||||||||||| |||| |||||||    
T  30249449 tacctcatctttgtaccgattccgacccctcttctc 30249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 13358439 - 13358554
Alignment:
Q  133 tcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaatttta 232  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||  |  |||||| |||||||||||| ||||||||||| |||| ||| | ||||    
T  13358439 tcatatcccaatttttgacctaagaccctacattcatacaccctctgatacggaatattatctgacttttcacagaaaaattcgacagagaggtacttta 13358538  T
Q  233 aaatatctcatctttg 248  Q
    ||||| ||||| ||||    
T  13358539 aaatacctcatttttg 13358554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 22704486 - 22704602
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    |||||||| |||||||||||||||||| ||||||||||||| || | || |||  |  | ||||||||||||||| | |||||||| |||| ||| ||||    
T  22704486 tgtcatactccaatttttgacctaagaccctacattcatacgccgtttggccctgatcagtctctgacttttcagtg-aaaattcgacagagaggtattt 22704584  T
Q  231 taaaatatctcatctttg 248  Q
    ||||||| ||||| ||||    
T  22704585 taaaatacctcatttttg 22704602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 38227885 - 38227822
Alignment:
Q  186 aatattctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcatctttgt 249  Q
    |||||||||||||||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||    
T  38227885 aatattctctgacttttcagtgaaaaattcggcagagaggtactttaaaatacctcatttttgt 38227822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 15394824 - 15394853
Alignment:
Q  128 gcctgtcataccccaatttttgacctaaga 157  Q
    ||||||||||||||||||||||||||||||    
T  15394824 gcctgtcataccccaatttttgacctaaga 15394853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21100603 - 21100648
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaa 45  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||    
T  21100603 tctgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaa 21100648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 33771 - 33646
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||| | |||||||||||||    | ||||| | |||| ||| |||||||||| || ||| ||||||||| ||| ||||    
T  33771 tgtcataccccaatttttgacctaacatcctacattcatacgttgtttgacctagaatagtctttgacttttcaaaggaaatttcggcagataggtattt 33672  T
Q  231 taaaatatctcatctttgtaccgatt 256  Q
    ||||||| ||||| ||||| ||||||    
T  33671 taaaatacctcatttttgttccgatt 33646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 13385688 - 13385768
Alignment:
Q  135 ataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcg 216  Q
    ||||||||||||||||| ||| | ||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||    
T  13385688 ataccccaatttttgac-taaaatcctacattcatacagtctctgacccggaatattctctgacttttcagagaaaaattcg 13385768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 28277349 - 28277466
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||| || |||||| || |||||| || || |||| || |||| ||||||  |||||||| ||| |||||| |||||| ||||||||| | | ||||    
T  28277349 tgtcatatcctaattttggatctaagatcccactttcacactccctttgacccgaaatattctttgatttttcaaagaaaatttcggcagagaagtattt 28277448  T
Q  231 taaaatatctcatctttg 248  Q
    ||||||| ||||| ||||    
T  28277449 taaaatacctcatttttg 28277466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36104623 - 36104578
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaattgaataaaaag 46  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||    
T  36104623 tctgcttctgatctgtgttttcagttaggagaaaatgaagaaaaag 36104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 27808648 - 27808608
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatac 171  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  27808648 tgtcataccccaatttttgacctaagaccctgcattcatac 27808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 23816677 - 23816631
Alignment:
Q  197 acttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    ||||||||| ||||| ||||||||||||| ||||| |||||||||||    
T  23816677 acttttcagtgaaaacttcggcagaaaggtattttgaaatatctcat 23816631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 24655406 - 24655368
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcat 169  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  24655406 tgtcataccccaatttttgacgtaagatcctacattcat 24655368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 20733220 - 20733284
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgatt 256  Q
    ||||||| ||||||| ||||| ||||||||| ||| ||||||||||| ||||| ||||| ||||||    
T  20733220 tctctgatttttcagtgaaaa-ttcggcagagaggtattttaaaatacctcatttttgttccgatt 20733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45539356 - 45539405
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaagaaa 49  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||||||    
T  45539356 tctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaa 45539405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 7588 - 7476
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||| | ||||||||||||| || | ||||    |||||||| ||| ||||||||||||||||||| ||| ||  ||||    
T  7588 tgtcataccccaatttttgacctaaaatcctacattcatacgccttttgacattgaatattctttgatttttcagagaaaaattcggtagagagttattt 7489  T
Q  231 taaaatatctcat 243  Q
    ||||||| |||||    
T  7488 taaaatacctcat 7476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 272
Target Start/End: Complemental strand, 4707 - 4566
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||| | |||||||||||||  | | ||||||  |||| ||| |||||||||| ||  || ||||||||| |   ||||    
T  4707 tgtcataccccaatttttgacctaacatcctacattcatacgtcgtttgaccctgaatagtctttgacttttcaaaggcaatttcggcagacatatattt 4608  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctct 272  Q
    ||||||||||||| ||| | |||||| | | |||||||||||    
T  4607 taaaatatctcatttttattccgatttcgagccttcttctct 4566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 272
Target Start/End: Complemental strand, 4915 - 4774
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||| | |||||||||||||  | | ||||||  |||| ||| |||||||||| ||  || ||||||||| |   ||||    
T  4915 tgtcataccccaatttttgacctaacatcctacattcatacgtcgtttgaccctgaatagtctttgacttttcaaaggcaatttcggcagacatatattt 4816  T
Q  231 taaaatatctcatctttgtaccgattcccacccttcttctct 272  Q
    ||||||||||||| ||| | |||||| | | |||||||||||    
T  4815 taaaatatctcatttttattccgatttcgagccttcttctct 4774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 148913 - 149020
Alignment:
Q  149 gacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcatctttg 248  Q
    ||||||| | ||||||||||||   | | ||||||  |||| ||| ||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||    
T  148913 gacctaacatcctacattcatatgtcttttgaccctgaatagtctttgacttttcggagaaaaattcggcagagatgtattttaaaatatctcatttttg 149012  T
Q  249 taccgatt 256  Q
    | ||||||    
T  149013 ttccgatt 149020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 5323 - 5218
Alignment:
Q  142 aatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctc 241  Q
    ||||||||||||||   ||||| ||||||||| |||||| |   |||||||| |||||||||| |||||| |||| ||| |||| ||||||||| | |||    
T  5323 aatttttgacctaaactcctactttcatacactctctgatctggaatattctttgacttttcaaagaaaatttcgacaggaaggtattttaaaacacctc 5224  T
Q  242 atcttt 247  Q
    ||||||    
T  5223 atcttt 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 17784 - 17673
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||||  |||||| ||||||  ||| ||||||  |  | |||||||| |||| | | ||||||||||||| ||| ||||    
T  17784 tgtcataccccaatttttgacctaaggtcctacaatcatacgtcctttgaccctgatcagtctctgacatttcggtg-aaaattcggcagagaggtattt 17686  T
Q  231 taaaatatctcat 243  Q
    ||||||| |||||    
T  17685 taaaatacctcat 17673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 362920 - 362808
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattt 230  Q
    ||||||||||||||||||||||||||  |||||||||||    | | ||||||  |  | |||| |||||||||| ||||||||||||||| ||| ||||    
T  362920 tgtcataccccaatttttgacctaaggtcctacattcatgtgtcgtttgaccccgaccaatctcagacttttcagtgaaaaattcggcagagaggtattt 362821  T
Q  231 taaaatatctcat 243  Q
    |||| || |||||    
T  362820 taaactacctcat 362808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 73389 - 73275
Alignment:
Q  135 ataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctctgacttttcagagaaaaattcggcagaaaggaattttaaa 234  Q
    |||||||||||||| || ||||| |  || |||| || | || ||||||  |||||||| ||||||| ||||||||| |||| |||| ||| ||||||||    
T  73389 ataccccaattttttacgtaagatctcactttcacacgctctttgacccggaatattctttgactttgcagagaaaatttcgacagagaggtattttaaa 73290  T
Q  235 atatctcatctttgt 249  Q
    ||| ||||| |||||    
T  73289 atacctcatttttgt 73275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2739 - 2694
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaattgaataaaaag 46  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||    
T  2739 tctgcttctgatctgtgttttcagttaggagaaaatgaagaaaaag 2694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7534 - 7567
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  7534 tctgcttctgatcagtgttttcagttaggagaaa 7567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0420 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 10899 - 10939
Alignment:
Q  131 tgtcataccccaatttttgacctaagaacctacattcatac 171  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  10899 tgtcataccccaatttttgacctaagaccctgcattcatac 10939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 38064 - 38012
Alignment:
Q  206 agaaaaattcggcagaaaggaattttaaaatatctcatctttgtaccgattcc 258  Q
    ||||||||||| |||| ||| ||||||||||| |||||||||||||| |||||    
T  38064 agaaaaattcgacagagaggtattttaaaatacctcatctttgtaccaattcc 38012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 777 - 823
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaag 46  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  777 tctgcttctgatcagtgttttcagcttaggagaaatagaagaaaaag 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 211645 - 211599
Alignment:
Q  1 tctgcttctgatcagtgttttcag-ttaggagaaattgaataaaaag 46  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||    
T  211645 tctgcttctgatcagtgttttcagcttaggagaaaacgaataaaaag 211599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24601 - 24634
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  24601 tctgcttctgattagtgttttcagttaggagaaa 24634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 358 - 318
Alignment:
Q  208 aaaaattcggcagaaaggaattttaaaatatctcatctttg 248  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  358 aaaaattcggcagaaaggtattttaaaatacctcatatttg 318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3508 - 3556
Alignment:
Q  1 tctgcttctgatcagtgttttcagttaggagaaattgaataaaaagaaa 49  Q
    ||||||||||||| || |||||||||||||||||  ||| |||||||||    
T  3508 tctgcttctgatctgtattttcagttaggagaaaaagaagaaaaagaaa 3556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 24299 - 24327
Alignment:
Q  129 cctgtcataccccaatttttgacctaaga 157  Q
    |||||||||||||||||||||||||||||    
T  24299 cctgtcataccccaatttttgacctaaga 24327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 41270 - 41218
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    ||||||| ||||||| |||||||||| |||| ||| ||||||||||| |||||    
T  41270 tctctgatttttcagtgaaaaattcgacagagaggtattttaaaatacctcat 41218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 29118 - 29066
Alignment:
Q  191 tctctgacttttcagagaaaaattcggcagaaaggaattttaaaatatctcat 243  Q
    ||||||| ||||||| ||||||||||||||| ||| ||||| ||||| |||||    
T  29118 tctctgatttttcagtgaaaaattcggcagagaggtattttgaaatacctcat 29066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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