View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_50 (Length: 277)
Name: NF6900_low_50
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 24638958 - 24639225
Alignment:
| Q |
1 |
ggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24638958 |
ggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataa |
24639057 |
T |
|
| Q |
101 |
tgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639058 |
tgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagc |
24639157 |
T |
|
| Q |
201 |
taactcagaacaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
268 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639158 |
taactcagaacaaggagtttcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
24639225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 48100075 - 48100340
Alignment:
| Q |
4 |
tcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgc |
103 |
Q |
| |
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|||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || |
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| T |
48100075 |
tcatcgtatggagtgccagcggaggtactgagcttctgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgcgcgggcaatgattt |
48100174 |
T |
|
| Q |
104 |
cactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaa |
203 |
Q |
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| T |
48100175 |
caccaacatagatactctgactaaggaaaatcccaccaacatgtctagtcacggcaatgcccaaaaaataactcagtggacccagatccttcatagcaaa |
48100274 |
T |
|
| Q |
204 |
ctcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
268 |
Q |
| |
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|||||| ||||||||| |||||||||||| |||| || || ||||||||||||||||||||||| |
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| T |
48100275 |
ctcagaggcaaggagtgccatgatggattttcgaagctcatgggaggaggtgatgaggatgatgtc |
48100340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 20620069 - 20619996
Alignment:
| Q |
10 |
tatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccat |
83 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||| || |||||||| |
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| T |
20620069 |
tatgaagtgttgacggtggtactgagcttctgtttggtgtcaactgtagtagcaaaaggttcacacgaggccat |
20619996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 44386975 - 44386707
Alignment:
| Q |
1 |
ggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataa |
100 |
Q |
| |
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||||| || ||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44386975 |
ggatcgtcatatgaagtgccggcggtggtactgagcttttgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgctcgagcaataa |
44386876 |
T |
|
| Q |
101 |
tgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagc |
200 |
Q |
| |
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| |||||||||| |||| || ||||| |||| | | ||||| | ||||| ||||||||| || |||||||||||||| ||||||| || || |
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| T |
44386875 |
tatcactagcataggtactctggctgaggaagagtccaccatcatgtttagtcacggaaatgcccaaaaaataactcagtggacccaaatccttaatggc |
44386776 |
T |
|
| Q |
201 |
taactcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
268 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||| |
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| T |
44386775 |
aaactcagatgcaaggagtgtcatgatggatttccgaagatcatgggaggatgtgatgaggatgatgtc |
44386707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 9932793 - 9933058
Alignment:
| Q |
4 |
tcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgc |
103 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || |
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| T |
9932793 |
tcatcatatggagtgtcagcggaggtactgagcttctgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgcgcgggcaatgattt |
9932892 |
T |
|
| Q |
104 |
cactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaa |
203 |
Q |
| |
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||| |||||| ||||| ||||| || || | | | | ||||||| ||||| |||||||||| || |||||||||||||| |||||||||||| || |
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| T |
9932893 |
caccagcatagatactctgactaaggaaaatcccaccaacatgtctagtcacggcaatgcccaaaaaataactcagtggacccagatccttcatagcaaa |
9932992 |
T |
|
| Q |
204 |
ctcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgatgtc |
268 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||| || || ||||||||||||||||||||||| |
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| T |
9932993 |
ctcagaggcaaggagtgccatgatggattttcgaagctcatgggaggaggtgatgaggatgatgtc |
9933058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 21877366 - 21877629
Alignment:
| Q |
3 |
atcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatg |
102 |
Q |
| |
|
|||||||||||||||| || | ||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||||| || |||||||||||| | |
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|
| T |
21877366 |
atcatcgtatgaagtgacatcagtggtactgagtttttgcttggttacaactggagtagcagaaggtttgcacaaggccatgtctactcgagcaataaag |
21877465 |
T |
|
| Q |
103 |
ccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagcta |
202 |
Q |
| |
|
|||||||||||||||| ||||| | || | | | | ||||||||||||||| | | |||||| ||||||||||| |||||| |||||||||||| | |
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| T |
21877466 |
tcactagcataaatactctgactagggaaaatcctaccagcatgtctggtcacgaaagtgcccaggaagtaactcaatggacccaaatccttcatagtaa |
21877565 |
T |
|
| Q |
203 |
actcaga-acaaggagtgtcatgatggatttctgaagatcgtgagaggaggtgatgaggatgat |
265 |
Q |
| |
|
||||||| |||| |||| |||||||||||| |||||||| || |||||||||||||||||||| |
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|
| T |
21877566 |
actcagaggcaagtagtgccatgatggatttatgaagatcatgggaggaggtgatgaggatgat |
21877629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 22208132 - 22208206
Alignment:
| Q |
27 |
ggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
101 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |||||||||||| ||||| ||||||| || |||||||| |
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| T |
22208132 |
ggtactgagcttttgtttggtgtcaattggagtagtagaaggtttgcacgaggcgatgcctgtgcgggcaataat |
22208206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 23583616 - 23583548
Alignment:
| Q |
33 |
gagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
101 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
23583616 |
gagcttctgtttggtgtcaactggagtagtagaaggtttgcacgaggccatgcctgctcgggcaataat |
23583548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 23583500 - 23583380
Alignment:
| Q |
149 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaac-aaggagtgtcatgatggatttctgaagatcgtgaga |
247 |
Q |
| |
|
||||||| ||||||| || || |||| || |||||| ||||||||||||| |||||||| |||||||| |||||| ||||| |||||| || || |
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| T |
23583500 |
tggtcacggcaatgccaaaaaaataacacaatggacccaaatccttcatagcaaactcagaggtaaggagtgccatgatagattttcgaagataatggga |
23583401 |
T |
|
| Q |
248 |
ggaggtgatgaggatgatgtc |
268 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
23583400 |
ggaggtgataaggatgatgtc |
23583380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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