View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_52 (Length: 260)
Name: NF6900_low_52
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_52 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 491050 - 490818
Alignment:
| Q |
12 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491050 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcc |
490951 |
T |
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| Q |
112 |
cacgagtgaatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaagtttggtttcaaaccccggttcaaacagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490950 |
cacgagtgaatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaagtttggtttcaaaccccggttcaaacagg |
490851 |
T |
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| Q |
212 |
agaagtacgccatgctaatgtgccttggatgat |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
490850 |
agaagtacgccatgctaatgtgccttggatgat |
490818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 13223125 - 13223357
Alignment:
| Q |
12 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13223125 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcc |
13223224 |
T |
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| Q |
112 |
cacgagtgaatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaagtttggtttcaaaccccggttcaaacagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13223225 |
cacgagtgaatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaagtttggtttcaaaccccggttcaaacagg |
13223324 |
T |
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| Q |
212 |
agaagtacgccatgctaatgtgccttggatgat |
244 |
Q |
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| T |
13223325 |
agaagtacgccatgctaatgtgccttggatgat |
13223357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 186555 - 186792
Alignment:
| Q |
12 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccct-ggaccgcccggatc |
110 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||| |||||||||| || ||| |||||| |||||||||||||| |
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| T |
186555 |
aacctgtgctcgagagatagctctccatacactgataagggatgtatggattctcgagaagagaggagccgtggtggcccccccccggaccgcccggatc |
186654 |
T |
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| Q |
111 |
ccacgagtgaatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaa----gtttggtttcaaaccccggttcaa |
206 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |
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| T |
186655 |
ccacgagtgaatagaaagttagatctacatgggatctcacctgaatcgccccatctatcctcctgaggagaagtttgtttggtttcaaactccgattcaa |
186754 |
T |
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| Q |
207 |
acaggagaagtacgccatgctaatgtgccttggatgat |
244 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
186755 |
acaggaggagtacgccatgctaatgtgccttggatgat |
186792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 2031027 - 2030801
Alignment:
| Q |
16 |
tgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcccacg |
115 |
Q |
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|||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| | |||| |||| ||||||| |
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| T |
2031027 |
tgtgctcgagagatagttgtccatataccgataagagatgtataaattctcgagaggagaggagccatgatggtccccc-tagaccacccgaatcccaca |
2030929 |
T |
|
| Q |
116 |
agtgaatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaagtttggtttcaaaccccggttcaaacaggagaa |
215 |
Q |
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|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
2030928 |
agtgaatagaaagttggatctacaatggatcttacctaaatcgccccatctatcctcgtgaagagaagtttggtttcaaaccccgattcaaacaggagaa |
2030829 |
T |
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| Q |
216 |
gtacgccatgctaatgtgccttggatga |
243 |
Q |
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||||| |||||||||||| ||||||||| |
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| T |
2030828 |
gtacgtcatgctaatgtgtcttggatga |
2030801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 12333143 - 12332921
Alignment:
| Q |
20 |
ctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcccacgagtg |
119 |
Q |
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|
||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||| |||| | ||||| |||| |
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| T |
12333143 |
ctcgacagatagttgtcgatatactgataagaaatgtatgaattcttgagaggagaagagccatgatggtcccccc-ggactacccgaaccccacaagtg |
12333045 |
T |
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| Q |
120 |
aatagaaagttggatctacattggatctcacctgaatcgccccatctatcctcctgaggagaagtttggtttcaaaccccggttcaaacaggagaagtac |
219 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12333044 |
aatacaaagttggatctatattggatctcacctgaatcgccccatctatcctcttgaggagaagtttggtttcaaaccccggttcaaacaggagaagtac |
12332945 |
T |
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| Q |
220 |
gccatgctaatgtgccttggatga |
243 |
Q |
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|||| |||||||||||| |||| |
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| T |
12332944 |
atcatggtaatgtgccttgcatga |
12332921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 26345736 - 26345816
Alignment:
| Q |
108 |
atcccacgagtgaatagaaagttggatctacattggatctcacctgaa-tcgccccatctatcctcctgaggagaagtttg |
187 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||| | |||||||||||| |
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| T |
26345736 |
atcccacgagtgaatagaaagtttgatctgcattggatctcacctgaattcaccccatctatcctcttaaggagaagtttg |
26345816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 34654378 - 34654264
Alignment:
| Q |
12 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtcccccctggaccgcccggatcc |
111 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
34654378 |
aacctgtgctcgagagatagctatccatatactgataagggatgtatgaattctcgagatgagaggagccatgatggtc-cccctggaccgcccggatcc |
34654280 |
T |
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| Q |
112 |
cacgagtgaatagaaa |
127 |
Q |
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|||||||||||||||| |
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| T |
34654279 |
cacgagtgaatagaaa |
34654264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 31865540 - 31865458
Alignment:
| Q |
12 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggagaggagccatgatggtccccc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31865540 |
aacctgtgctcgagagatagctgtccatatactgataagggatgtatgaattctcgagaggaaaggagccatgatggtccccc |
31865458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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