View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_54 (Length: 253)
Name: NF6900_low_54
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 36640666 - 36640894
Alignment:
| Q |
10 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
109 |
Q |
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| T |
36640666 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
36640765 |
T |
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| Q |
110 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36640766 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagc--cacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
36640863 |
T |
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| Q |
210 |
acgttttgctaaagcatctgcaaatgagttc |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36640864 |
acgttttgctaaagcatctgcaaatgagttc |
36640894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 36633302 - 36633528
Alignment:
| Q |
14 |
cagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttct |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36633302 |
cagcaacacaatcccacctatcagctaaacacaccccaccacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttct |
36633401 |
T |
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| Q |
114 |
ctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgt |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | |
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| T |
36633402 |
ctatttctgtaaaataaattttgaattgcaaactagcaagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactt |
36633501 |
T |
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| Q |
214 |
tttgctaaagcatctgcaaatgagttc |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36633502 |
tttgctaaagcatctgcaaatgagttc |
36633528 |
T |
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Back To:
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