View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_56 (Length: 246)
Name: NF6900_low_56
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 26001120 - 26001333
Alignment:
| Q |
16 |
gcccgtaagcgcgaatctagatcaaccaccactcacaacccgacccgtcggtggcaccgaatacggctggtgcaaagccgtacctggcggcacaggctcc |
115 |
Q |
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| T |
26001120 |
gcccgaaagcgcgaatctagatcaaccaccactcacaacccgacccgtcggtggcaccgaatacggctggtgcaaagccgtacctggcggcacaggctcc |
26001219 |
T |
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| Q |
116 |
accgtcctcagcctccttctctcaaaaccaccacaaatccctcatctccaaaacgccctccacaaactccaaaattcccaccctatcctccgttcaagga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26001220 |
accgtcctcagcctccttctctcaaaaccaccacaaatccctcatctccaaaacgccctccacaaactccaaaattcccaccctatcctccgttcaagga |
26001319 |
T |
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| Q |
216 |
tccacttcgacaac |
229 |
Q |
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|||||||||||||| |
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| T |
26001320 |
tccacttcgacaac |
26001333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 25993930 - 25993975
Alignment:
| Q |
160 |
tctccaaaacgccctccacaaactccaaaattcccaccctatcctc |
205 |
Q |
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|||||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
25993930 |
tctccaaacagcactccacaaactccaaaattcccatcctatcctc |
25993975 |
T |
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