View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_57 (Length: 243)
Name: NF6900_low_57
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11370470 - 11370708
Alignment:
| Q |
1 |
ttctaagtaatgctttgaaagcaatggcatcaactataaactatgatgcattgaagacaatgacatcaggcataggtttctacttggtatctgaagatga |
100 |
Q |
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| T |
11370470 |
ttctaagtaatgctttgaaagcaatggcatcaactataacctatgatgcattgaagacaatgacatcaggcataggtttctacttggtatctgaagatga |
11370569 |
T |
|
| Q |
101 |
ccgtaaagagatgaggaattgtttgactagggtaaatgtgattacatccgtaattgtgttgatgagcaaagacataagattaaaatctatgtctatcttc |
200 |
Q |
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| T |
11370570 |
ccgtaaagagatgaggaattgtttgactagggcaaatgtgattacatctgtaattgtgttgatgagcaaagacataagattaaaatctatgtctgtcttc |
11370669 |
T |
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| Q |
201 |
aaaaatgaaatcaattacatcatagatgatgtccatctc |
239 |
Q |
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||||||||||||||||||||||||||||| || |||||| |
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| T |
11370670 |
aaaaatgaaatcaattacatcatagatgaagttcatctc |
11370708 |
T |
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