View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_58 (Length: 242)

Name: NF6900_low_58
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_58
NF6900_low_58
[»] chr8 (5 HSPs)
chr8 (84-234)||(25890010-25890160)
chr8 (2-87)||(6887074-6887159)
chr8 (6-95)||(36317253-36317342)
chr8 (2-76)||(35134470-35134544)
chr8 (27-95)||(18790039-18790106)
[»] chr5 (4 HSPs)
chr5 (25-95)||(20101008-20101078)
chr5 (32-95)||(22642798-22642861)
chr5 (27-80)||(20695944-20695997)
chr5 (25-95)||(16072268-16072338)
[»] chr4 (7 HSPs)
chr4 (25-95)||(8926420-8926490)
chr4 (3-95)||(30797655-30797747)
chr4 (2-93)||(21048354-21048445)
chr4 (26-76)||(25367705-25367755)
chr4 (26-87)||(18778310-18778371)
chr4 (10-71)||(19085357-19085418)
chr4 (28-96)||(17331498-17331565)
[»] chr2 (4 HSPs)
chr2 (25-95)||(25461227-25461297)
chr2 (4-97)||(24438561-24438654)
chr2 (27-95)||(21243250-21243318)
chr2 (25-95)||(31275273-31275343)
[»] chr1 (9 HSPs)
chr1 (2-76)||(23420510-23420583)
chr1 (2-95)||(33175500-33175593)
chr1 (17-89)||(19256820-19256892)
chr1 (26-60)||(14932257-14932291)
chr1 (6-76)||(15415905-15415975)
chr1 (2-72)||(23506767-23506837)
chr1 (6-75)||(31318436-31318505)
chr1 (28-95)||(11768900-11768967)
chr1 (35-95)||(25778902-25778962)
[»] chr6 (5 HSPs)
chr6 (9-75)||(12960292-12960358)
chr6 (8-95)||(21604654-21604741)
chr6 (27-76)||(8037023-8037073)
chr6 (2-76)||(16174380-16174454)
chr6 (26-96)||(22557855-22557925)
[»] chr3 (2 HSPs)
chr3 (6-103)||(25189338-25189433)
chr3 (2-95)||(26419941-26420035)
[»] chr7 (9 HSPs)
chr7 (27-95)||(2352150-2352217)
chr7 (2-53)||(5637396-5637447)
chr7 (2-95)||(11466918-11467010)
chr7 (2-77)||(22334184-22334259)
chr7 (26-92)||(2978802-2978868)
chr7 (26-76)||(21236372-21236422)
chr7 (59-95)||(2090958-2090994)
chr7 (27-95)||(10925052-10925119)
chr7 (42-86)||(20347562-20347606)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 84 - 234
Target Start/End: Complemental strand, 25890160 - 25890010
Alignment:
Q  84 tttgatgcactttgtcaattttcgttatcaataaacgttttcgtacctgaggtttatcaatgattctattccatgtacatcttcatctaagatgcataaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25890160 tttgatgcactttgtcaattttcgttatcaataaacgttttcgtgcttgaggtttatcaatgattctattccatgtacatattcatctaagatgcataaa 25890061  T
Q  184 atctaatttcttcgaccaccaaagaaattttccatcaatattttgatgtcc 234  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  25890060 atctaatttcttcgactaccaaagaaattttccatcaatattttgaggtcc 25890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 6887159 - 6887074
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttg 87  Q
    |||||||||||| ||||||||  ||||||||||||||||| ||||||||||| ||||||||||  ||| |||||| ||| ||||||    
T  6887159 ttctaataaattccgctaattaccaagttgaacgacaatccttgtggagacgataacttactaatttaatacttgggtatgatttg 6887074  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 36317342 - 36317253
Alignment:
Q  6 aataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||| ||||||  |||||| |||||||| |  | | |||||| |||||| |||| ||||| |||||||||||||||||||||||    
T  36317342 aataaatttcactaattatcaagttaaacgacaaccccttttgagacgataacttgctactttattgcttgagtacgatttgatgcactt 36317253  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 35134544 - 35134470
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttg 76  Q
    ||||||||||||| |||||||  |||||| |||||||||| || ||||||| |||||| ||||  ||||||||||    
T  35134544 ttctaataaattttgctaattaccaagttaaacgacaatccttatggagacagtaactcactattttattacttg 35134470  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 18790039 - 18790106
Alignment:
Q  27 agttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||| ||||  | || ||||| ||||||||||| ||||||||||| ||||||||| |||||||    
T  18790039 agttgaacgaaaatccctatgaagacgataacttactactttattacttga-tacgatttggtgcactt 18790106  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 20101008 - 20101078
Alignment:
Q  25 caagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||||||||||||||| || |||||||  ||||||||||| |||||||||||||| ||||||||||||||    
T  20101008 caagttgaacgacaatccttatggagactataacttactactttattacttgagtatgatttgatgcactt 20101078  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 22642861 - 22642798
Alignment:
Q  32 aacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||||||||  | |||||||| ||||||||||| |||||||||||||| |||||| |||||||    
T  22642861 aacgacaatccatttggagacgttaacttactacattattacttgagtatgatttggtgcactt 22642798  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 20695944 - 20695997
Alignment:
Q  27 agttgaacgacaatctttgtggagacggtaacttactacgttattacttgagta 80  Q
    |||||||||||||||  |||||||||| ||||||||||| |||||||| |||||    
T  20695944 agttgaacgacaatccctgtggagacgataacttactactttattactggagta 20695997  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 16072268 - 16072338
Alignment:
Q  25 caagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||||||  ||||||| ||||||||||  | ||||||||| || |||||||||||||||||  |||||||    
T  16072268 caagttgactgacaatccttgtggagacaattacttactactttcttacttgagtacgatttcgtgcactt 16072338  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 8926420 - 8926490
Alignment:
Q  25 caagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||||||||  | |||||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  8926420 caagttgaacgacaatccctatggagacgataacttgctactttattacttgagtatgatttgatgcactt 8926490  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 30797655 - 30797747
Alignment:
Q  3 tctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggt-aacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||||| ||||||  ||||||||| |||||| |||| |||||| | |||||||||| ||||||||||  |||||||||||||||||    
T  30797655 tctaataaatttcgttaattgctaagttgaacaacaatccttgttgagacgataaacttactactttattacttg-ttacgatttgatgcactt 30797747  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 21048354 - 21048445
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcac 93  Q
    |||||||||||| ||||||||  |||||||||| |||||| ||||| ||||| ||||||||    |||||| ||| |||||||||| |||||    
T  21048354 ttctaataaattccgctaattaccaagttgaacaacaatccttgtgaagacgataacttacctttttattatttgcgtacgatttggtgcac 21048445  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 25367705 - 25367755
Alignment:
Q  26 aagttgaacgacaatctttgtggagacggtaacttactacgttattacttg 76  Q
    |||||||||||||||   ||||||||| |||||||||||| ||||||||||    
T  25367705 aagttgaacgacaattcatgtggagactgtaacttactactttattacttg 25367755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 18778310 - 18778371
Alignment:
Q  26 aagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttg 87  Q
    ||||||||||||||||    |||| ||| ||||||||||| ||||||||||||||| |||||    
T  18778310 aagttgaacgacaatccacatggaaacgataacttactactttattacttgagtacaatttg 18778371  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 19085418 - 19085357
Alignment:
Q  10 aatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttatt 71  Q
    |||| |||||||||  ||| |||||||||||   |||||||||||||||||||||| |||||    
T  19085418 aattccgctaattgctaagctgaacgacaattcatgtggagacggtaacttactactttatt 19085357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 17331565 - 17331498
Alignment:
Q  28 gttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcacttt 96  Q
    ||||||||||||||  | |||||||  ||||||||||| ||||||||| | ||||||||| ||||||||    
T  17331565 gttgaacgacaatccctatggagactataacttactactttattactt-actacgatttggtgcacttt 17331498  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 25461227 - 25461297
Alignment:
Q  25 caagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||||||||  | |||||||| ||||||||||| |||||||||| |||| |||||||||||||    
T  25461227 caagttgaacgacaatccatttggagacgataacttactactttattacttgtgtacaatttgatgcactt 25461297  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 24438561 - 24438654
Alignment:
Q  4 ctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactttg 97  Q
    |||||||||| | |||||   ||||||||||| |||||| |||  | ||| ||||||||||  |||||||||| ||||||||||||||||||||    
T  24438561 ctaataaattccactaatcaccaagttgaacggcaatctatgttaaaacgataacttactattttattacttgcgtacgatttgatgcactttg 24438654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 21243250 - 21243318
Alignment:
Q  27 agttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||||| ||| ||||| || ||||||||||| ||||||||| ||||| ||||| |||||||    
T  21243250 agttgaacgacaatgtttatggagtcgataacttactactttattactttagtacaatttggtgcactt 21243318  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 31275273 - 31275343
Alignment:
Q  25 caagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||| |||| |||||| || |||||||| ||||||||||| ||||||||||  ||||||||| |||||||    
T  31275273 caagtggaacaacaatccttatggagacgataacttactactttattacttgtttacgatttggtgcactt 31275343  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 23420583 - 23420510
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttg 76  Q
    |||||||||||| || ||||||  |||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  23420583 ttctaataaatt-cgttaattgctaagttgaacgacaatccttgtggagacgataacttactactttattacttg 23420510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 33175593 - 33175500
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||| | |||||||  ||||||||||||||||| |||||||| | ||||||||||  ||||||||||  || |||||| |||||||    
T  33175593 ttctaataaattcctctaattgctaagttgaacgacaatctatgtggagaagataacttactattttattacttgtttatgatttggtgcactt 33175500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 19256892 - 19256820
Alignment:
Q  17 ctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgat 89  Q
    ||||||| | ||||||||||||||   |||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  19256892 ctaattgccgagttgaacgacaattcatgtggatacgataacttactactttattacttaagtacgatttgat 19256820  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 14932291 - 14932257
Alignment:
Q  26 aagttgaacgacaatctttgtggagacggtaactt 60  Q
    |||||||||||||||||||||||||||| ||||||    
T  14932291 aagttgaacgacaatctttgtggagacgataactt 14932257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 15415975 - 15415905
Alignment:
Q  6 aataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttg 76  Q
    ||||||||| | ||||||  ||||||||||||||||| | |||||||| |||||||||   ||||||||||    
T  15415975 aataaattttgttaattgctaagttgaacgacaatctctatggagacgataacttactgttttattacttg 15415905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 23506767 - 23506837
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttatta 72  Q
    ||||||||||||  |||||||  |||||||||||||| ||  ||| |||||| ||||||||||| ||||||    
T  23506767 ttctaataaattctgctaattaccaagttgaacgacattcactgtagagacgataacttactactttatta 23506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 31318505 - 31318436
Alignment:
Q  6 aataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattactt 75  Q
    ||||||||||| ||||||    |||||||||||| |  |||||||||| ||||||||||| |||||||||    
T  31318505 aataaatttcgttaattgctccgttgaacgacaaaccatgtggagacgataacttactactttattactt 31318436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 11768967 - 11768900
Alignment:
Q  28 gttgaacgacaatctttgtggagacggt-aacttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||||||||||||  |||||||||| | |||||||||| ||||| ||| | |||||||||||||||||    
T  11768967 gttgaacgacaatccatgtggagacgataaacttactactttattcctt-attacgatttgatgcactt 11768900  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 25778902 - 25778962
Alignment:
Q  35 gacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||| |||| | |||||||| || |||||||||||||| |||| | |||||||    
T  25778902 gacaatctttgttgagatgataacttaccactttattacttgagtatgattggctgcactt 25778962  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 12960358 - 12960292
Alignment:
Q  9 aaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattactt 75  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||||||||||  || |||||||||    
T  12960358 aaatttctctaattaccaagttgaacgacaatctttatggagacggtaacttatgactttattactt 12960292  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 21604741 - 21604654
Alignment:
Q  8 taaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||| ||||||||  | |||||| |||||||||||||| ||| | || |||||||| |||||| ||| ||| |||||||| |||||    
T  21604741 taaattccgctaattatctagttgagcgacaatctttgtgtagatgatagcttactactttattatttgcgtaagatttgattcactt 21604654  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 8037023 - 8037073
Alignment:
Q  27 agttgaacgacaatctttgtggagacggt-aacttactacgttattacttg 76  Q
    ||||||| |||||||| |||||||||||| |||||||||| ||||||||||    
T  8037023 agttgaatgacaatctatgtggagacggtaaacttactactttattacttg 8037073  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 16174454 - 16174380
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttg 76  Q
    ||||||||||||   |||||||  ||||||||| ||||||| |||||| ||| |||| |||||| ||||||||||    
T  16174454 ttctaataaattcttctaattgctaagttgaacaacaatctatgtggacacgataacctactactttattacttg 16174380  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 22557925 - 22557855
Alignment:
Q  26 aagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcacttt 96  Q
    ||||||||| | |||||||||| ||||  ||||||||||| |||||||||   ||||||||| ||||||||    
T  22557925 aagttgaacaaaaatctttgtgaagactataacttactactttattacttttttacgatttggtgcacttt 22557855  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 25189338 - 25189433
Alignment:
Q  6 aataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactttgtcaatt 103  Q
    ||||||||||| ||||||  ||||||||||||||||| ||||||||||  ||||||  || ||||||||||  ||||| |||||||| ||||||||||    
T  25189338 aataaatttcgttaattgctaagttgaacgacaatctctgtggagacgagaacttatcactttattacttg-ttacgaattgatgca-tttgtcaatt 25189433  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 26419941 - 26420035
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggag--acggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||| ||  |||||  ||||||||| ||| |||||||||||  ||| ||||||||||  ||||||||||  ||||||||||| |||||    
T  26419941 ttctaataaattccgtcaattgctaagttgaacaacagtctttgtggagacacgataacttactattttattacttg-ttacgatttgattcactt 26420035  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 2352217 - 2352150
Alignment:
Q  27 agttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||||||||  |||||||| | ||||||||||| ||||||||||  |||||||||||||||||    
T  2352217 agttgaacgacaatccatgtggagatgataacttactactttattacttg-ttacgatttgatgcactt 2352150  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 5637396 - 5637447
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacg 53  Q
    |||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  5637396 ttctaataaatttctctaattgctaagttgaacgacaatccttgtggagacg 5637447  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 11467010 - 11466918
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||||||||||  ||||||||  |||||||| |||||||  |||||||||  |||| |||||| |||||||||   |||||||||||||||||    
T  11467010 ttctaataaattctgctaattgctaagttgaatgacaatccatgtggagacaataacctactactttattactt-cttacgatttgatgcactt 11466918  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 22334259 - 22334184
Alignment:
Q  2 ttctaataaatttcgctaattgacaagttgaacgacaatctttgtggagacggtaacttactacgttattacttga 77  Q
    ||||||||||||  |||||||  ||||||||| |||||| | |||| ||| | ||||||||||| |||||||||||    
T  22334259 ttctaataaattcagctaattaccaagttgaatgacaatttatgtgaagatgataacttactactttattacttga 22334184  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 2978868 - 2978802
Alignment:
Q  26 aagttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgca 92  Q
    ||||||||||||||||  ||||||||||  |||||||||  |||||| ||||||| |||||| ||||    
T  2978868 aagttgaacgacaatccctgtggagacgacaacttactattttattatttgagtaggatttggtgca 2978802  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 21236372 - 21236422
Alignment:
Q  26 aagttgaacgacaatctttgtggagacggtaacttactacgttattacttg 76  Q
    ||||||||||||||| | |||||||||| ||||||| ||| ||||||||||    
T  21236372 aagttgaacgacaatttctgtggagacgataacttattactttattacttg 21236422  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 2090994 - 2090958
Alignment:
Q  59 ttactacgttattacttgagtacgatttgatgcactt 95  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  2090994 ttactactttattacttgagtacgatttggtgcactt 2090958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 10925052 - 10925119
Alignment:
Q  27 agttgaacgacaatctttgtggagacggtaacttactacgttattacttgagtacgatttgatgcactt 95  Q
    |||||||||| ||||  | || ||||| ||||||||||| ||||||||||| ||||||||| |||||||    
T  10925052 agttgaacgaaaatccctatgaagacgataacttactactttattacttga-tacgatttggtgcactt 10925119  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 20347562 - 20347606
Alignment:
Q  42 tttgtggagacggtaacttactacgttattacttgagtacgattt 86  Q
    ||||||| || | ||||||||||| ||||||||||||||||||||    
T  20347562 tttgtggggatgataacttactactttattacttgagtacgattt 20347606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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