View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_60 (Length: 239)
Name: NF6900_low_60
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 15766627 - 15766707
Alignment:
| Q |
65 |
caaaaaactcctctaggctttttcctagtaatttcaatcaaattttaataaaagcatgttttgagaatcatgcatactgaa |
145 |
Q |
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| T |
15766627 |
caaaaaactcctctaggctttttcctagtaatttcaatcaaattttaataaaagcacgttttgagaatcatgcatactgaa |
15766707 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 15766691 - 15766769
Alignment:
| Q |
160 |
gaatcatgcatactgaacaaactcacgtattaagaattccctttggtactttgaattattatcatttccaatgttaact |
238 |
Q |
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| T |
15766691 |
gaatcatgcatactgaacaaactcacgtattaagaattccctttggtactttgaattattatcatttccaatgtcaact |
15766769 |
T |
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