View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_66 (Length: 229)
Name: NF6900_low_66
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41410359 - 41410578
Alignment:
| Q |
1 |
catatcattttgtgcgaaattgaaacccattcagtttg-ctaatttatgtatcttgcaataatttacagctgaaagcttttagcttggaaactggtccat |
99 |
Q |
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| T |
41410359 |
catatcattttgtgtgaaattgaaaaccattcagtttggctaatttatgtatcttgcaataatttacagctgaaagcttttagcttggaacctggtccat |
41410458 |
T |
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| Q |
100 |
gcaccaaggaccaagagatgaaaaggattacatattcaggaccaggagaaggaagggattacatattcagatggcaaggttttggcaagaaggaaaggaa |
199 |
Q |
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| T |
41410459 |
gcaccaaggaccaagagatgaaagggattacatattcaggaccaggagaaggaagggattacatattcagatggcaaggttttggcaagaaggaaaggaa |
41410558 |
T |
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| Q |
200 |
cctgctagtgtgagcagaag |
219 |
Q |
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| T |
41410559 |
cctgctagtgtgagcagaag |
41410578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 2978872 - 2978956
Alignment:
| Q |
33 |
agtttgctaatttatgtatcttgcaataatttacagctgaaagcttttagcttggaaactggtccatgcaccaaggaccaagaga |
117 |
Q |
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| T |
2978872 |
agttttctaatttatgtatcttgcaataaatcaaaggtgaaagctttcagcttggaacctggtacacgcaccaaggacctagaga |
2978956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 2978953 - 2979027
Alignment:
| Q |
145 |
gagaaggaagggattacatattcagatggcaaggttttggcaagaaggaaaggaacctgctagtgtgagcagaag |
219 |
Q |
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| T |
2978953 |
gagaaggaagggatcatagattcagatggtgaggttttggcaagagggagagggacctacaagtgtgagcagaag |
2979027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 37519481 - 37519560
Alignment:
| Q |
140 |
accaggagaaggaagggattacatattcagatggcaaggttttggcaagaaggaaaggaacctgctagtgtgagcagaag |
219 |
Q |
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| T |
37519481 |
accaagagaatgaagggatcatatattcggatggtgaggttttggcaagacggaaatgaacatacaagtgtgagcagaag |
37519560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 37519393 - 37519439
Alignment:
| Q |
33 |
agtttgctaatttatgtatcttgcaataatttacagctgaaagcttt |
79 |
Q |
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| T |
37519393 |
agttggctaatttatgtatcttgcaataaattacagatgaatgcttt |
37519439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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