View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_68 (Length: 222)

Name: NF6900_low_68
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_68
NF6900_low_68
[»] chr8 (3 HSPs)
chr8 (26-210)||(1735317-1735501)
chr8 (1-210)||(17422845-17423054)
chr8 (20-201)||(22348764-22348945)
[»] chr3 (5 HSPs)
chr3 (1-210)||(14693217-14693426)
chr3 (17-210)||(10782167-10782360)
chr3 (5-210)||(7401977-7402182)
chr3 (23-207)||(13306870-13307054)
chr3 (1-204)||(10150782-10150985)
[»] chr7 (3 HSPs)
chr7 (5-210)||(14342647-14342852)
chr7 (1-158)||(18133578-18133735)
chr7 (1-183)||(18171652-18171834)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-204)||(11355-11558)
[»] chr2 (4 HSPs)
chr2 (1-201)||(23200629-23200829)
chr2 (6-201)||(22638317-22638512)
chr2 (1-201)||(23626258-23626458)
chr2 (23-180)||(24911914-24912070)
[»] scaffold0319 (1 HSPs)
scaffold0319 (1-201)||(9634-9834)
[»] chr6 (2 HSPs)
chr6 (1-189)||(23435099-23435287)
chr6 (1-201)||(19035178-19035378)
[»] scaffold0016 (2 HSPs)
scaffold0016 (6-201)||(126559-126754)
scaffold0016 (44-180)||(179311-179447)
[»] scaffold0130 (1 HSPs)
scaffold0130 (1-183)||(43139-43321)
[»] chr4 (2 HSPs)
chr4 (1-204)||(13289364-13289567)
chr4 (26-201)||(14772567-14772742)
[»] scaffold0241 (1 HSPs)
scaffold0241 (26-201)||(11493-11668)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-201)||(29616-29816)
[»] scaffold0001 (1 HSPs)
scaffold0001 (18-201)||(126760-126943)
[»] chr5 (1 HSPs)
chr5 (23-201)||(21511006-21511184)
[»] chr1 (2 HSPs)
chr1 (23-201)||(22805838-22806016)
chr1 (17-110)||(41380414-41380507)
[»] scaffold0108 (1 HSPs)
scaffold0108 (1-204)||(26202-26405)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-201)||(67003-67163)
[»] scaffold0282 (1 HSPs)
scaffold0282 (23-201)||(5538-5716)
[»] scaffold0064 (1 HSPs)
scaffold0064 (26-204)||(37590-37768)
[»] scaffold0026 (1 HSPs)
scaffold0026 (23-201)||(138973-139151)
[»] scaffold0656 (1 HSPs)
scaffold0656 (1-201)||(5036-5235)
[»] scaffold0023 (2 HSPs)
scaffold0023 (23-131)||(65268-65376)
scaffold0023 (23-131)||(74446-74554)
[»] scaffold0019 (1 HSPs)
scaffold0019 (23-180)||(159086-159243)
[»] scaffold0107 (1 HSPs)
scaffold0107 (23-141)||(1874-1992)
[»] scaffold0046 (1 HSPs)
scaffold0046 (72-207)||(33613-33748)
[»] scaffold0013 (4 HSPs)
scaffold0013 (44-180)||(75405-75541)
scaffold0013 (86-180)||(83876-83970)
scaffold0013 (86-180)||(121548-121642)
scaffold0013 (125-207)||(148842-148924)
[»] scaffold0362 (1 HSPs)
scaffold0362 (30-201)||(14463-14634)
[»] scaffold0053 (1 HSPs)
scaffold0053 (86-209)||(42256-42379)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 1735317 - 1735501
Alignment:
Q  26 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 125  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1735317 cagaaagctgtgttcgagatggttaagaagccagcaacagaacgaatttcacccccattgtcaattctgaagaaagatcattcaaaagaagacgaggaga 1735416  T
Q  126 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgtcca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  1735417 tgacttcaaatttcacggaatctgacccaagtcttgacatagtctgtaatgtggtttccatcttgcctgtggaatacgatgtcca 1735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17423054 - 17422845
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| |||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||    
T  17423054 caatgttgacaaaacggaggataagcagaaagaggtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaatcttgaagaaa 17422955  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| ||||||| ||||||||||||||||| |||||||||| ||||||||| || || ||||||||||||||||||||||| ||| | ||||||||||    
T  17422954 gatcatcccaaagaggatgaggagatgacttcgaatttcacgggatctgacccgagcctcgacatagtttgcaatgtggtttctatcctacctgtggaat 17422855  T
Q  201 atgatgtcca 210  Q
    | ||||||||    
T  17422854 acgatgtcca 17422845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 22348945 - 22348764
Alignment:
Q  20 ggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatg 119  Q
    ||||||||||||| |||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||| | |||||||||||| ||||||| ||||    
T  22348945 ggcaagcagaaagttgtgttcgaaatggttaaaaaaccagcaatagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaagaggatg 22348846  T
Q  120 aggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | || ||||||||||||||||  | ||||||||| |||||||| || || |||||||||||||| ||| | |||||| ||||    
T  22348845 aagaaatgacttcaaatttcattggatctgaccccagtcttgatatcgtatgcaatgtggtttcgatcctacctgtgaaata 22348764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 14693426 - 14693217
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  14693426 caatattgacaaaacggaggacaagcagaaagccgtgttcgaaatggttaaaaaaccagcaacagagagaatttcacccccattgtcaatcttgaagaaa 14693327  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||||||||    
T  14693326 gaccattccaaagaggataaggagatgacttcaaatttcacggaatctgacccaaacctcgacatagtttgcaatgtggtttctatcttgcctgtggaat 14693227  T
Q  201 atgatgtcca 210  Q
    | ||||||||    
T  14693226 acgatgtcca 14693217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 10782167 - 10782360
Alignment:
Q  17 gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaag 116  Q
    |||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||| | |||||||    
T  10782167 gaggacaagcagaaagctgtgtttgagatggttaagaagccagcaacagagcgaatttcgcccccattgtcgattctgatgaaagatcatccaaaagaag 10782266  T
Q  117 atgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgtcca 210  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  10782267 atgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatgatgtcca 10782360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 7402182 - 7401977
Alignment:
Q  5 attgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatc 104  Q
    ||||||||||  ||||  || |||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||||| |||||||  ||     
T  7402182 attgacaaaatggaggataaacagaaagctgtgttcgaaatggttaagaaggcagcaacagaaagaatttcacccccattgtcaattttgaagaagtatt 7402083  T
Q  105 attccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatga 204  Q
     ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||| |||||| |||||| ||    
T  7402082 gttccaaagaggatgaggagatgacttcaaatttcacggaatgtgacccgagtctcgacatagtttgcaatgtggtttcaatcctgcctgaggaatacga 7401983  T
Q  205 tgtcca 210  Q
    ||||||    
T  7401982 tgtcca 7401977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 13307054 - 13306870
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||| ||||| |    
T  13307054 aagcagaaaactgtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaattttgaagaaagatcatcccaaagaggatgaag 13306955  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgt 207  Q
    | |||||||| |||||||||| ||||||||| ||||| || |||||||||||||||||||| ||| | || |||||||| |||||    
T  13306954 atatgacttcgaatttcacgggatctgaccctagtctcgatatagtttgcaatgtggtttctatcctaccggtggaatacgatgt 13306870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10150782 - 10150985
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| ||||||||  |||||||||||  |||| |||||||||||||||||| |||||||  |||||| |||| |||||||||||||||||| ||||||||    
T  10150782 caatgttgacaaaggagagggcaagcgaaaagatgtgttcgaaatggttaaaaaaccagtcacagagagaatctcacccccattgtcaattttgaagaaa 10150881  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||| ||  | ||||||||||    
T  10150882 gatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtcttgacatagtatgcaatgtggtttctatactacctgtggaat 10150981  T
Q  201 atga 204  Q
    ||||    
T  10150982 atga 10150985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 14342852 - 14342647
Alignment:
Q  5 attgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatc 104  Q
    |||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||     
T  14342852 attgaccaaacggaggataagcagaaagctgtgttcgaaatggttaagaaaccagcaacaaaaagaatttcacccccattgtcaattttgaagaaagatt 14342753  T
Q  105 attccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatga 204  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||||||||||| ||    
T  14342752 gttccaaagaggatgaggagatgacttcaaatttcacggaatctgacccgagcctcgacatagtttgcaatgtggtttcaatcctgcctgtggaatacga 14342653  T
Q  205 tgtcca 210  Q
    ||||||    
T  14342652 tgtcca 14342647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 18133735 - 18133578
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    ||||||||||||||  ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133735 caatattgacaaaagggagggcaagcaaaaagttgtgttcgagatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 18133636  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc 158  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133635 gatcgttccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc 18133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18171834 - 18171652
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| ||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||  ||||||||    
T  18171834 caatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagaaagaatttcgcccccattgtcaatcttgaagaaa 18171735  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 183  Q
    |||||| |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| | ||||||||||||    
T  18171734 gatcatcccaaggaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtacaatgtggtttc 18171652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11355 - 11558
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||| | ||||||    
T  11355 caatgttgacaaaacagagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagagagaatctcgcccccattgtcaattttaaagaaa 11454  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| ||||||| ||||| || ||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||||||| ||| | ||| ||||||    
T  11455 gatcatcccaaagaggatgaagaaatgacttcaaatttcactgaatctgaccctagtctcaacatagtatgcaatgtggtttctatcctacctatggaat 11554  T
Q  201 atga 204  Q
    ||||    
T  11555 atga 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23200829 - 23200629
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||    
T  23200829 caatgttgacaaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaa 23200730  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| ||||||| ||||| || |||||||| |||||||||| ||||||||| ||||| || ||||| |||||||||||||| ||| | || |||||||    
T  23200729 gatcatcccaaagaggatgaagaaatgacttcgaatttcacgggatctgaccctagtctcgatatagtgtgcaatgtggtttctatcctaccggtggaat 23200630  T
Q  201 a 201  Q
    |    
T  23200629 a 23200629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 22638317 - 22638512
Alignment:
Q  6 ttgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatca 105  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||||||||    
T  22638317 ttgataaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatca 22638416  T
Q  106 ttccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | || ||||||||    
T  22638417 tcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcctaccggtggaata 22638512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23626458 - 23626258
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||  |||| |||    
T  23626458 caatgttgacaaaacagagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaatattgaaaaaa 23626359  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| |||| || ||||  || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | || |||||||    
T  23626358 gatcatcccaaggaggatgtagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcctaccggtggaat 23626259  T
Q  201 a 201  Q
    |    
T  23626258 a 23626258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 24911914 - 24912070
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||| |||||| |||||||||||||| |||||||||||| || ||||||||||||| ||||||||  | ||||| || ||| ||||||| ||||| |    
T  24911914 aagcagagagctgttttcgaaatggttaaaaaaccagcaacaaagagaatttcaccccc-ttgtcaatcttaaagaaggaccatcccaaagaggatgaag 24912012  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 180  Q
    | ||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||    
T  24912013 aaatgacttcaaatttcactggatctgaccccagtctcgacatagtatgcaatgtggt 24912070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 9634 - 9834
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| ||||||||  |||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||| | ||||||    
T  9634 caatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattttaaagaaa 9733  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    || ||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||    
T  9734 gaacatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacctgtggaat 9833  T
Q  201 a 201  Q
    |    
T  9834 a 9834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23435099 - 23435287
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||| ||||||||    
T  23435099 caatgttgacaaaacagagggtaagcagaaggttgtgttcgaaatggttaagaaaccagcaatagagagaatctcgcccccattgtcaattttgaagaaa 23435198  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatctt 189  Q
    |||||| |||| || ||||| || |||||||| |||||||||| ||||||||| ||||| |||||||| |||||||||||||| |||||    
T  23435199 gatcatcccaaggaggatgaagaaatgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttctatctt 23435287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 19035378 - 19035178
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| ||||||||  |||||||||||| |||||| |||||||||| ||||| ||||||||||||||| |||| ||| | |||||||||||| ||||||||    
T  19035378 caatgttgacaaaggagagggcaagcaaaaagctatgttcgaaatagttaaaaaaccagcaacagagagaatctcatctccattgtcaattttgaagaaa 19035279  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
     || || ||||| | ||||| || |||||||| |||||||| | ||||||||| |||||||| ||  | ||||||||||| || ||| | ||||||||||    
T  19035278 aataatcccaaaaaggatgaagaaatgacttcgaatttcactggatctgaccccagtcttgatattatatgcaatgtggtctcgatcctacctgtggaat 19035179  T
Q  201 a 201  Q
    |    
T  19035178 a 19035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 126754 - 126559
Alignment:
Q  6 ttgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatca 105  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||||||||    
T  126754 ttgataaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatca 126655  T
Q  106 ttccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| || ||||| |||||||||||||| ||| | || ||||||||    
T  126654 tcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgatatagtgtgcaatgtggtttctatcctaccggtggaata 126559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 179447 - 179311
Alignment:
Q  44 atggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacgg 143  Q
    |||||||| ||| |||| |||||  |||| || || || ||||||||| |||||||||| ||| | ||||| ||||| || ||||| || |||||| |      
T  179447 atggttaaaaaatcagccacagaaagaatctcccctcctttgtcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtcgaatttctcca 179348  T
Q  144 aatctgacccaagtcttgacatagtttgcaatgtggt 180  Q
    | |||||||||||  | || ||||| |||||||||||    
T  179347 agtctgacccaagcttcgatatagtgtgcaatgtggt 179311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 43139 - 43321
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||    
T  43139 caatgttgataaaacagagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaa 43238  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 183  Q
    |||||| |||| || ||||| ||  ||||||| |||||||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  43239 gatcatcccaaggaggatgaagaactgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttc 43321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13289567 - 13289364
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| ||||||||  |||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| || ||||||||||||||| | ||||||    
T  13289567 caatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcgcccccattgtcaattttaaagaaa 13289468  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||| ||||||    
T  13289467 gatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacctttggaat 13289368  T
Q  201 atga 204  Q
    ||||    
T  13289367 atga 13289364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 14772742 - 14772567
Alignment:
Q  26 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 125  Q
    |||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| || |    
T  14772742 cagagagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaa 14772643  T
Q  126 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    |||||||||||||||| | ||||||||| ||||| || ||||| ||||||||||| || ||| | |||||||||||    
T  14772642 tgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcgatcctacctgtggaata 14772567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 11493 - 11668
Alignment:
Q  26 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 125  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||| | |||||||||||| ||||||| ||||| || |    
T  11493 cagaaagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattataaagaaagatcatcccaaagaggatgaagaaa 11592  T
Q  126 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    |||||||||||||||| | ||||||||| |||||||| || || ||||||||||| || ||| | |||||||||||    
T  11593 tgacttcaaatttcactggatctgaccccagtcttgatatcgtatgcaatgtggtctcaatcctacctgtggaata 11668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 29616 - 29816
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||||||||||||| | |||||||||| |||| |||||||||||||||||| |||||||| | |||| |||| |||||||| ||||||||| ||||||||    
T  29616 caatattgacaaaagaaagggcaagcaaaaagatgtgttcgaaatggttaaaaaaccagccatagagagaatctcacccccgttgtcaattttgaagaaa 29715  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    |||||| ||||||| ||||| || ||||| ||| ||||||| | ||||||||| || || |||||||| |||||||||||||| ||| | || |||||||    
T  29716 gatcatcccaaagaggatgaagaaatgacctcagatttcaccggatctgaccccagcctagacatagtatgcaatgtggtttctatcctaccagtggaat 29815  T
Q  201 a 201  Q
    |    
T  29816 a 29816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 126943 - 126760
Alignment:
Q  18 agggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaaga 117  Q
    |||| ||||||||||| ||||||||||||||||| |||||| |||||||| |||| ||||||||||||| |||| | |||||||||||| |||| || ||    
T  126943 agggaaagcagaaagcggtgttcgaaatggttaaaaaaccaacaacagagagaatctcacccccattgtgaattttaaagaaagatcatcccaatgagga 126844  T
Q  118 tgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    ||| || ||||||||||||||||||| ||||||||| |||||||| || || ||||||||||| || ||| | |||||||||||    
T  126843 tgaagaaatgacttcaaatttcacgggatctgaccccagtcttgatatcgtatgcaatgtggtctcgatcctacctgtggaata 126760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 21511006 - 21511184
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| | |||||||||||| |||| || ||||| |    
T  21511006 aagcagaaagcggtgttcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaggaggatgaag 21511105  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | ||||||||||||||||| | ||||||||| |||||||| ||  | ||||||||||| || ||||| | |||||||||    
T  21511106 aaatgacttcaaatttcactggatctgaccccagtcttgatatcatatgcaatgtggtctcgatcttacttgtggaata 21511184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 22806016 - 22805838
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||| |||||| || ||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| |    
T  22806016 aagcagagagctgtatttgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaag 22805917  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | ||||||||||||||||| | ||||||||| | ||| || ||||| ||||||||||| || ||| | |||||||||||    
T  22805916 aaatgacttcaaatttcactggatctgaccccaatctcgatatagtatgcaatgtggtctcaatcctacctgtggaata 22805838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 41380507 - 41380414
Alignment:
Q  17 gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattcca 110  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41380507 gagggcaagcagaaagctgtgttcgagatggttaagaagccagcaacagagcgaatttcacccccattgtcaattttgaagaaagatcattcca 41380414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26202 - 26405
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||| ||||||||  |||||  || |||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||| ||||||||    
T  26202 caatgttgacaaaggagaggataaacagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattttgaagaaa 26301  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    ||   |  ||| || ||||| ||||||||||| |||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||||||||    
T  26302 gactctctcaaggaggatgaagagatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaacgtggtgtccatcctacctgtggaat 26401  T
Q  201 atga 204  Q
    ||||    
T  26402 atga 26405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 67003 - 67163
Alignment:
Q  41 gaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttca 140  Q
    ||||||||| | ||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||||||||    
T  67003 gaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttca 67102  T
Q  141 cggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | | ||||||||| ||||| || ||||| ||||||||||| || ||| | |||||||||||    
T  67103 ctggatctgaccccagtctcgatatagtatgcaatgtggtctcaatcctacctgtggaata 67163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 5716 - 5538
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||| || ||| || ||||||||| | ||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| |    
T  5716 aagcagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaag 5617  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | ||||||||||||||||| | ||||||||| ||||| || ||||| ||||||||||| || ||  | |||||||||||    
T  5616 aaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcaattctacctgtggaata 5538  T

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Target: scaffold0064 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 37768 - 37590
Alignment:
Q  26 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 125  Q
    |||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| ||||||||||   | |||| || ||||| || |    
T  37768 cagaaagctgtgttcgaaatggttaaaaagccagcaacatagagaatttcacccccattgtcaattttgaagaaagactttcccaaggaggatgaagata 37669  T
Q  126 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatga 204  Q
    ||||||| |||||||| | ||||||||| ||||| |||||||| || || ||||| || ||| | ||||||||||||||    
T  37668 tgacttcgaatttcactggatctgaccctagtctcgacatagtatgtaacgtggtgtctatcctacctgtggaatatga 37590  T

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Target: scaffold0026 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 139151 - 138973
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||| |||||| |||||||||||||| |||||||||||| || | || ||||| || ||||||||  | |||||||| ||| ||||||| ||||| |    
T  139151 aagcagagagctgtattcgaaatggttaaaaaaccagcaacaaagaggatctcacctcccttgtcaatcttaaagaaagaccatcccaaagaggatgaag 139052  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    | |||||||| |||||||| |  |||||||| ||||| |||||||| |||||||||||||| ||| | ||||| |||||    
T  139051 aaatgacttcgaatttcactgggtctgaccctagtctcgacatagtatgcaatgtggtttcaatcctacctgtagaata 138973  T

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Target: scaffold0656 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0656
Description:

Target: scaffold0656; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 5036 - 5235
Alignment:
Q  1 caatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaa 100  Q
    |||||||||||||  | |||| ||||| | |||||| |||||||||||||| || |||||||||||| |||| |||||||| ||||||||  | ||||||    
T  5036 caatattgacaaaggaaaggg-aagcaaatagctgttttcgaaatggttaaaaagccagcaacagagagaatctcaccccccttgtcaatcttaaagaaa 5134  T
Q  101 gatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaat 200  Q
    || ||| |||| || ||||| || |||||||| |||||||| | ||||||||  ||||| |||||||| ||||||||||| || ||  | ||||||||||    
T  5135 gaccatcccaaggaggatgaagaaatgacttcgaatttcactggatctgacctcagtctcgacatagtatgcaatgtggtatcaattctacctgtggaat 5234  T

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Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 65268 - 65376
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| | |||||||||||| ||||||| ||||| |    
T  65268 aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag 65367  T
Q  123 agatgactt 131  Q
    | |||||||    
T  65368 aaatgactt 65376  T

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Target: scaffold0023; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 74446 - 74554
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| | |||||||||||| ||||||| ||||| |    
T  74446 aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag 74545  T
Q  123 agatgactt 131  Q
    | |||||||    
T  74546 aaatgactt 74554  T

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Target: scaffold0019 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 159243 - 159086
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||||||| || || ||||||||||| || |||||||||||  |||| ||||| || || |||||  |||||||| | ||| |||| || ||||| |    
T  159243 aagcagaaagccgtttttgaaatggttaaaaagccagcaacagaaagaatctcaccgcccttatcaatcttgaagaaaaaccatcccaaggaggatgaag 159144  T
Q  123 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 180  Q
    | |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||    
T  159143 aaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggt 159086  T

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Target: scaffold0107 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 1874 - 1992
Alignment:
Q  23 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 122  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||| ||||||||  | |||||||| ||| ||||  | ||||| |    
T  1874 aagcagagagctgttttcgaaatggttaaaaaaccagcaacagagagaatctcaccccccttgtcaatcttaaagaaagaccatcccaagtaggatgaag 1973  T
Q  123 agatgacttcaaatttcac 141  Q
    | |||||||| ||||||||    
T  1974 aaatgacttcgaatttcac 1992  T

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Target: scaffold0046 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 33613 - 33748
Alignment:
Q  72 tttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttg 171  Q
    ||||||| || || |||||  |||||||||| ||| ||||||| ||||| || |||||||| |||||||  | ||||||||| ||||| |||||||| ||    
T  33613 tttcacctcccttatcaatcttgaagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcattggatctgaccccagtctcgacatagtgtg 33712  T
Q  172 caatgtggtttccatcttgcctgtggaatatgatgt 207  Q
    ||||||||| ||  | |||||||||||||| |||||    
T  33713 caatgtggtgtcagttttgcctgtggaatacgatgt 33748  T

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Target: scaffold0013 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 75405 - 75541
Alignment:
Q  44 atggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacgg 143  Q
    |||||||| |||||||| || ||  |||| || || || || |||||| |||||||||| ||| | ||||| ||||| || ||||| ||||||||||| |    
T  75405 atggttaaaaaaccagccacggaaagaatctcccctcctttatcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtcaaatttcacag 75504  T
Q  144 aatctgacccaagtcttgacatagtttgcaatgtggt 180  Q
    |||||||| ||||||| || ||||| |||||||||||    
T  75505 aatctgactcaagtctcgatatagtatgcaatgtggt 75541  T

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Target: scaffold0013; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 83876 - 83970
Alignment:
Q  86 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 180  Q
    |||||| |||||||||| ||| | ||||| |||||  | ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  83876 tcaattttgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt 83970  T

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Target: scaffold0013; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 121548 - 121642
Alignment:
Q  86 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 180  Q
    |||||| |||||||||| ||| | ||||| |||||  | ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  121548 tcaattttgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt 121642  T

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Target: scaffold0013; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 148842 - 148924
Alignment:
Q  125 atgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgt 207  Q
    ||||| |||||||||||  |||||||||||||||| || ||||| ||||||||||| || || |||| ||| |||||||||||    
T  148842 atgacgtcaaatttcacaaaatctgacccaagtctcgatatagtatgcaatgtggtatcaatattgcatgttgaatatgatgt 148924  T

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Target: scaffold0362 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 14463 - 14634
Alignment:
Q  30 aagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgac 129  Q
    ||||||| |||||||||||||| |||||||| || ||  |||| || || || || |||||| |||||| ||||||| | || || ||||| || |||||    
T  14463 aagctgttttcgaaatggttaaaaaaccagccacggaaagaatctcccctcccttatcaattttgaagagagatcatcctaaggaggatgaagaaatgac 14562  T
Q  130 ttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 201  Q
    ||| |||||||| | |||| |||| ||||| || ||| | |||||||| || ||  | ||||||||||||||    
T  14563 ttcgaatttcactggatctaaccccagtctcgatataatatgcaatgtcgtgtcagttttgcctgtggaata 14634  T

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Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 42379 - 42256
Alignment:
Q  86 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttcca 185  Q
    |||||| |||||||| ||||| | || || ||||| || ||||| || |||||||| |||||||| |||||||| || ||||| ||||||||||| |       
T  42379 tcaattttgaagaaaaatcatcctaaggaggatgaagaaatgacgtcgaatttcactgaatctgatccaagtctcgatatagtgtgcaatgtggtgttag 42280  T
Q  186 tcttgcctgtggaatatgatgtcc 209  Q
    | |||||||| ||||| |||||||    
T  42279 ttttgcctgttgaatacgatgtcc 42256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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