View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_71 (Length: 202)
Name: NF6900_low_71
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_71 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 205758 - 205576
Alignment:
| Q |
10 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctatcatgttcgatcagaatcttgtactacctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
205758 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctaacatgttcgatcagaatcttgtacttcctt |
205659 |
T |
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| Q |
110 |
ttcgcagaagctccgagttctcagagggtannnnnnnnnnnnnncatttgtctatttctcttcgattttaggtgatgtccatc |
192 |
Q |
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| T |
205658 |
ttcgcagaagctccgagttctcagatggtattttttttatttttcatttgtctatttctcttcgattttaggtgttgttcatc |
205576 |
T |
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Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 14611619 - 14611801
Alignment:
| Q |
10 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctatcatgttcgatcagaatcttgtactacctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
14611619 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctaacatgttcgatcagaatcttgtacttcctt |
14611718 |
T |
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| Q |
110 |
ttcgcagaagctccgagttctcagagggtannnnnnnnnnnnnncatttgtctatttctcttcgattttaggtgatgtccatc |
192 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||| |
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| T |
14611719 |
ttcgcagaagctccgagttctcagatggtattttttttatttttcatttgtctatttctcttcgattttaggtgttgttcatc |
14611801 |
T |
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