View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_8 (Length: 705)

Name: NF6900_low_8
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_8
NF6900_low_8
[»] chr5 (5 HSPs)
chr5 (13-555)||(28532493-28533029)
chr5 (553-671)||(28533069-28533187)
chr5 (91-146)||(29021558-29021613)
chr5 (94-147)||(28673512-28673565)
chr5 (341-386)||(41900503-41900548)
[»] chr6 (14 HSPs)
chr6 (17-202)||(6588466-6588648)
chr6 (89-200)||(6416827-6416938)
chr6 (555-629)||(6587982-6588056)
chr6 (339-397)||(6593929-6593987)
chr6 (427-524)||(6588144-6588241)
chr6 (341-397)||(6423907-6423963)
chr6 (343-396)||(6410699-6410752)
chr6 (639-685)||(14810035-14810081)
chr6 (343-397)||(19633104-19633158)
chr6 (339-396)||(6417092-6417149)
chr6 (340-389)||(6596241-6596290)
chr6 (357-398)||(7132323-7132364)
chr6 (357-398)||(7135246-7135287)
chr6 (357-398)||(7138169-7138210)
[»] chr3 (8 HSPs)
chr3 (89-200)||(13469859-13469970)
chr3 (561-671)||(51763081-51763191)
chr3 (339-397)||(51763388-51763446)
chr3 (89-211)||(51763574-51763696)
chr3 (17-50)||(514011-514044)
chr3 (340-397)||(51113195-51113252)
chr3 (94-139)||(513925-513970)
chr3 (279-311)||(51763498-51763530)
[»] chr1 (4 HSPs)
chr1 (100-211)||(19467621-19467732)
chr1 (339-403)||(7555198-7555262)
chr1 (341-398)||(19467428-19467485)
chr1 (17-50)||(19467779-19467812)
[»] chr4 (13 HSPs)
chr4 (100-200)||(21833493-21833593)
chr4 (339-398)||(553759-553818)
chr4 (638-685)||(1537252-1537299)
chr4 (339-394)||(21833278-21833333)
chr4 (592-689)||(53759964-53760058)
chr4 (99-188)||(532589-532681)
chr4 (633-685)||(1547374-1547426)
chr4 (17-49)||(1601193-1601225)
chr4 (17-51)||(21833639-21833673)
chr4 (89-187)||(53761012-53761110)
chr4 (280-317)||(7225253-7225290)
chr4 (17-50)||(53761152-53761185)
chr4 (279-319)||(53760907-53760947)
[»] chr7 (9 HSPs)
chr7 (100-194)||(10615459-10615553)
chr7 (339-398)||(10615713-10615772)
chr7 (636-685)||(15091285-15091334)
chr7 (338-398)||(10169047-10169107)
chr7 (279-323)||(10169137-10169181)
chr7 (338-398)||(10176572-10176632)
chr7 (279-323)||(10176662-10176706)
chr7 (645-689)||(10167233-10167277)
chr7 (653-685)||(10616213-10616245)
[»] chr8 (4 HSPs)
chr8 (340-384)||(32151969-32152013)
chr8 (94-147)||(18314876-18314929)
chr8 (280-308)||(18314740-18314768)
chr8 (348-396)||(34935986-34936034)


Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 555
Target Start/End: Original strand, 28532493 - 28533029
Alignment:
Q  13 gacatcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagt 112  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532493 gacatcaatgtcggtctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagt 28532592  T
Q  113 tgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  28532593 tgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccatt 28532692  T
Q  213 gttataactacgagtccgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcgagttcttcgagcaaagggaaacattct 312  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||      |||||||||||||||||||||    
T  28532693 gttataactacgagttcgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg------tcgagcaaagggaaacattct 28532786  T
Q  313 gcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532787 gcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttac 28532886  T
Q  413 caacgtttgggagtttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagatt 512  Q
    |||||||||| |||||||||||| ||| |||||| |||| ||||   ||||||||||||||||||||||||||||||| ||| ||||||||||||||||     
T  28532887 caacgtttggaagtttgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgttacctagatagcgagagagatc 28532986  T
Q  513 gagggaattgagatgggtgaaccttttgaagaggctacgtagg 555  Q
    |||| |||||||||||||||||||||||||||||||| |||||    
T  28532987 gaggaaattgagatgggtgaaccttttgaagaggctaagtagg 28533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 553 - 671
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  553 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 652  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  653 tgaatatacattcccaaca 671  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  91 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 146  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  94 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 147  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  341 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 386  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 6588648 - 6588466
Alignment:
Q  17 tcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgct 116  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| |    
T  6588648 tcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgtt 6588552  T
Q  117 gaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 202  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588551 gaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  89 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 188  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  189 aagtgagagagc 200  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 629
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  555 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 629  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 397  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 524
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  427 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 524  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| ||||||||||||||||  | ||||  ||| || ||||||||||||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  341 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 397  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  343 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 396  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 639 - 685
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  639 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 685  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  343 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 397  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 396  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  340 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 389  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  357 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  357 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  357 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  89 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 188  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  189 aagtgagagagc 200  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 561 - 671
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  561 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 660  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  661 cattcccaaca 671  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 397  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  89 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 188  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  189 aagtgagagagcctctatcccat 211  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 514044 - 514011
Alignment:
Q  17 tcaatgttggtctctcacggagagcagaagcaat 50  Q
    ||||||||||||||||||||||||||||||||||    
T  514044 tcaatgttggtctctcacggagagcagaagcaat 514011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  340 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 397  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  94 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 139  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 51763530 - 51763498
Alignment:
Q  279 gaggtcgagttcttcgagcaaagggaaacattc 311  Q
    ||||||||||||||||||||| |||||||||||    
T  51763530 gaggtcgagttcttcgagcaatgggaaacattc 51763498  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  100 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 199  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  200 cctctatcccat 211  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 403  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  341 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 19467812 - 19467779
Alignment:
Q  17 tcaatgttggtctctcacggagagcagaagcaat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  19467812 tcaatgttggtctctcacggatagcagaagcaat 19467779  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  100 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 199  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  200 c 200  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 685
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  638 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 685  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 394  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 689
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
Q  592 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga 689  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga 53759964  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  99 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 188  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 685
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  633 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 685  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 1601193 - 1601225
Alignment:
Q  17 tcaatgttggtctctcacggagagcagaagcaa 49  Q
    |||||||||||||||||||||||||||||||||    
T  1601193 tcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 21833673 - 21833639
Alignment:
Q  17 tcaatgttggtctctcacggagagcagaagcaatg 51  Q
    ||||||||||||||||||||||||| |||||||||    
T  21833673 tcaatgttggtctctcacggagagctgaagcaatg 21833639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  89 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 187  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 7225290 - 7225253
Alignment:
Q  280 aggtcgagttcttcgagcaaagggaaacattctgcgat 317  Q
    ||||||||||||||||||||||||||||| || |||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgat 7225253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 53761185 - 53761152
Alignment:
Q  17 tcaatgttggtctctcacggagagcagaagcaat 50  Q
    ||||||||||||| ||||||||||||||||||||    
T  53761185 tcaatgttggtctttcacggagagcagaagcaat 53761152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 53760947 - 53760907
Alignment:
Q  279 gaggtcgagttcttcgagcaaagggaaacattctgcgataa 319  Q
    |||||||||||||||  |||||||||||||||| |||||||    
T  53760947 gaggtcgagttcttcccgcaaagggaaacattccgcgataa 53760907  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  100 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 194  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  339 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 685
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  636 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 685  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  338 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 10169181 - 10169137
Alignment:
Q  279 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 323  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10169181 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10169137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  338 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 398  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 10176706 - 10176662
Alignment:
Q  279 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 323  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10176706 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 645 - 689
Target Start/End: Complemental strand, 10167277 - 10167233
Alignment:
Q  645 gatgaatctgaatatacattcccaacactcatcaggtaaatctga 689  Q
    |||||||||||||||  |||||||||| || ||||||||||||||    
T  10167277 gatgaatctgaatatcaattcccaacattcgtcaggtaaatctga 10167233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 653 - 685
Target Start/End: Original strand, 10616213 - 10616245
Alignment:
Q  653 tgaatatacattcccaacactcatcaggtaaat 685  Q
    |||| ||||||||||||||||||||||||||||    
T  10616213 tgaagatacattcccaacactcatcaggtaaat 10616245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  340 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 384  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  94 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 147  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 18314768 - 18314740
Alignment:
Q  280 aggtcgagttcttcgagcaaagggaaaca 308  Q
    |||||||||||||||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaaca 18314740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 34936034 - 34935986
Alignment:
Q  348 gaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 396  Q
    |||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  34936034 gaaagatgtcaaagttgtaatattttgtgagaaaactcgcaaaccattt 34935986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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