View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_9 (Length: 680)

Name: NF6900_low_9
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_9
NF6900_low_9
[»] chr1 (4 HSPs)
chr1 (48-141)||(49713207-49713300)
chr1 (48-141)||(49655685-49655778)
chr1 (223-347)||(18655503-18655627)
chr1 (226-288)||(9850028-9850090)
[»] chr6 (9 HSPs)
chr6 (223-372)||(13562201-13562356)
chr6 (223-372)||(13561334-13561489)
chr6 (224-351)||(10673666-10673793)
chr6 (422-501)||(9928083-9928172)
chr6 (225-335)||(25439055-25439165)
chr6 (223-297)||(24318050-24318124)
chr6 (432-467)||(27439180-27439215)
chr6 (223-288)||(27108170-27108234)
chr6 (223-288)||(27149967-27150031)
[»] chr5 (12 HSPs)
chr5 (223-351)||(38603682-38603810)
chr5 (223-351)||(42962079-42962207)
chr5 (223-293)||(39050744-39050814)
chr5 (223-288)||(8358224-8358289)
chr5 (223-335)||(42963163-42963275)
chr5 (223-372)||(39051578-39051732)
chr5 (223-293)||(5163716-5163786)
chr5 (223-371)||(38602718-38602873)
chr5 (426-467)||(38473221-38473262)
chr5 (223-288)||(8359409-8359474)
chr5 (223-306)||(301416-301499)
chr5 (245-319)||(4904280-4904355)
[»] chr4 (10 HSPs)
chr4 (223-351)||(31204610-31204738)
chr4 (223-350)||(21569306-21569433)
chr4 (223-351)||(21570355-21570483)
chr4 (223-351)||(31205641-31205769)
chr4 (223-288)||(54823253-54823318)
chr4 (231-297)||(44219014-44219080)
chr4 (226-288)||(54822437-54822499)
chr4 (223-284)||(44217629-44217690)
chr4 (223-319)||(47573608-47573704)
chr4 (223-294)||(42698650-42698721)
[»] chr2 (7 HSPs)
chr2 (223-372)||(38593087-38593241)
chr2 (223-372)||(38596683-38596837)
chr2 (223-350)||(10330762-10330888)
chr2 (223-350)||(371900-372027)
chr2 (223-372)||(38593956-38594107)
chr2 (223-372)||(38597552-38597703)
chr2 (231-351)||(370831-370951)
[»] chr3 (10 HSPs)
chr3 (223-351)||(50002469-50002597)
chr3 (223-351)||(50003155-50003283)
chr3 (223-351)||(21248189-21248317)
chr3 (224-351)||(27225490-27225617)
chr3 (229-350)||(5409400-5409521)
chr3 (224-344)||(27226478-27226598)
chr3 (223-288)||(55387641-55387706)
chr3 (245-351)||(45730714-45730820)
chr3 (225-350)||(5384479-5384604)
chr3 (223-293)||(21247292-21247362)
[»] chr7 (13 HSPs)
chr7 (223-350)||(23153563-23153690)
chr7 (223-351)||(35044675-35044804)
chr7 (223-351)||(36584837-36584965)
chr7 (231-351)||(47536782-47536902)
chr7 (223-350)||(47535715-47535842)
chr7 (223-337)||(43704398-43704512)
chr7 (223-339)||(35045838-35045954)
chr7 (223-351)||(40321125-40321253)
chr7 (235-351)||(42520289-42520405)
chr7 (223-351)||(42521190-42521318)
chr7 (224-293)||(40322225-40322295)
chr7 (223-351)||(43703109-43703237)
chr7 (245-321)||(40881168-40881245)
[»] chr8 (8 HSPs)
chr8 (223-351)||(41767096-41767224)
chr8 (223-347)||(44770550-44770674)
chr8 (223-294)||(43415957-43416028)
chr8 (237-351)||(44769749-44769862)
chr8 (223-351)||(12820031-12820158)
chr8 (223-284)||(43414437-43414498)
chr8 (223-298)||(23768471-23768545)
chr8 (223-319)||(9189450-9189546)
[»] scaffold0013 (2 HSPs)
scaffold0013 (222-351)||(32157-32285)
scaffold0013 (222-351)||(27886-28016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (245-321)||(85038-85115)
[»] scaffold0003 (1 HSPs)
scaffold0003 (432-467)||(48147-48182)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 49713207 - 49713300
Alignment:
Q  48 cactggagggaggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcatcctgcaaagtgtgatacaggtttg 141  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49713207 cactggaggaaggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcattctgcaaaatgtgatacaggtttg 49713300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 49655685 - 49655778
Alignment:
Q  48 cactggagggaggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcatcctgcaaagtgtgatacaggtttg 141  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49655685 cactggaggaaggtgtggctttgataaagatgtatacaatttcaagtgttactgcactgatagagttcattctgcaaaatgtgatacaggtttg 49655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 18655503 - 18655627
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| |||||| |  ||||||||| ||||||| |||||||||||| | |||||||||||| |||   ||   |||||| |||||||||| ||||    
T  18655503 ttaaacgtttcaaaatgtttatttatctttgttttaatgatcaatttagtccttttttattaattttaaaatccttaaaaagaagaccgttggat-aaag 18655601  T
Q  322 gaggtccatcagatctaaaagtgtat 347  Q
    ||||||||| |||||||| |||||||    
T  18655602 gaggtccattagatctaatagtgtat 18655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 9850028 - 9850090
Alignment:
Q  226 aacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||  || ||||||||||||||    
T  9850028 aacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatcctattttattaattt 9850090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 13562356 - 13562201
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||||| ||||  |||  |||||| || ||||||| ||||    
T  13562356 ttaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcctattttattaattttaaactcctaaaaaagaagactgttggat-aaag 13562258  T
Q  322 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 372  Q
    ||| |||||||||||||| |||||||      |||||||||||||||||||||||||    
T  13562257 gagatccatcagatctaacagtgtatcaccaacacctaatttatatcactttcttca 13562201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 223 - 372
Target Start/End: Original strand, 13561334 - 13561489
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||| ||||||||| || || |||||||||| ||| |||||||||||||| ||||  ||   |||||| | |||||||| ||||    
T  13561334 ttaaacgtttcaaaatggtcttttatctttgttatagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagatcgttggat-aaag 13561432  T
Q  322 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 372  Q
     ||||||||||||||||| |||||||      |||||||||||||||||||||||||    
T  13561433 aaggtccatcagatctaatagtgtatcaccaacacctaatttatatcactttcttca 13561489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 10673666 - 10673793
Alignment:
Q  224 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 322  Q
    ||||||||| ||  ||||||||||| ||| ||||  |||||||||||||| |||||||||||||| |||||| |   |||||| ||||||| || |||||    
T  10673666 taaacgtttcaatttggtcctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaacctttcaaaaagaagaccgttgaat-aaagg 10673764  T
Q  323 aggtccatcagatctaaaagtgtatcacc 351  Q
    |||||||||| ||||||| ||||||||||    
T  10673765 aggtccatcatatctaaaggtgtatcacc 10673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 501
Target Start/End: Complemental strand, 9928172 - 9928083
Alignment:
Q  422 tctcatcactacacctccaatttcttaaatccagaaatcatcaaca----------tcaacatgatgatgatgatcatcaatttcttcat 501  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  9928172 tctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaatcaacatcaacatgatgatgatcatcatcaatttcttcat 9928083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 25439165 - 25439055
Alignment:
Q  225 aaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagga 323  Q
    |||||||| ||  ||||| ||||||||| |||| || |||||||| |||  ||||||||||||| ||||||||   |||||| |||||||||| ||||||    
T  25439165 aaacgtttcaatttggtcttttatctttgttttcattatcaatttggtccaattttattaattttaaacctcttaaaaagaagaccgttggat-aaagga 25439067  T
Q  324 ggtccatcagat 335  Q
    ||| ||||||||    
T  25439066 ggttcatcagat 25439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 24318124 - 24318050
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctct 297  Q
    |||||| ||||||  ||||||||||||||| ||||  ||||||||||  ||  ||||||||||||||||||||||    
T  24318124 ttaaactttttaatttggtcctttatctttgttttcgtcatcaatttgatcccattttattaatttcaaacctct 24318050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 27439180 - 27439215
Alignment:
Q  432 acacctccaatttcttaaatccagaaatcatcaaca 467  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27439180 acacctccaatttcttaaatccagaaatcgtcaaca 27439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 27108234 - 27108170
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    |||||||||||||  ||| |||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  27108234 ttaaacgttttaatttggacctt-atctttgttttcatcatcgatttagtcctattttattaattt 27108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 27150031 - 27149967
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    |||||||||||||  ||| |||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  27150031 ttaaacgttttaatttggacctt-atctttgttttcatcatcgatttagtcctattttattaattt 27149967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 38603810 - 38603682
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||||  |||  |||||| |||||||||| ||||    
T  38603810 ttaaacttttcaaaatggtcctttatctttgttttagtcatcaatttggtcctattttattaattttaaactcctaaaaaagaagaccgttggat-aaag 38603712  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
     ||||||||||||||||| |||||||||||    
T  38603711 aaggtccatcagatctaatagtgtatcacc 38603682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 42962079 - 42962207
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    ||||||| |||||| ||||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  42962079 ttaaacgctttaaattggtcctttatctttgttttcatcatcaatttggtcctattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 42962177  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||| || ||||||||  ||||||||||    
T  42962178 gaggtctataagatctaatggtgtatcacc 42962207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 39050744 - 39050814
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 293  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| ||||    
T  39050744 ttaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcatattttattaattttaaac 39050814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 8358224 - 8358289
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  8358224 ttaaacgttttaaaatggtcttttatctttgttttagtcatcattttggtcatattttattaattt 8358289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 42963275 - 42963163
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 321  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||| || |||||||||||||| ||||||||   |||||  |||||||||| ||||    
T  42963275 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttaatcctattttattaattttaaacctctcaaaaagatgaccgttggat-aaag 42963177  T
Q  322 gaggtccatcagat 335  Q
    ||||||||||||||    
T  42963176 gaggtccatcagat 42963163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 39051732 - 39051578
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaaaccgttggataaaagg 322  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||||||  || |||||||||||||| ||||  ||   ||| | |||| | ||| ||||     
T  39051732 ttaaatgtttcaaaatggtcctttatctttgttttagtcatcaatttgatcctattttattaattttaaactcctcaaaaaaagaccgctagat-aaaga 39051634  T
Q  323 aggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 372  Q
    ||||||||||||||||| |||||||      |||||||||||||||| ||||||||    
T  39051633 aggtccatcagatctaatagtgtatcatcaacacctaatttatatcattttcttca 39051578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 5163716 - 5163786
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 293  Q
    ||||| |||| |||||| |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  5163716 ttaaatgtttcaaaatgatcctttatctttgttttaattatcaatttggtcatattttattaattttaaac 5163786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 371
Target Start/End: Original strand, 38602718 - 38602873
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatc-tttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaa 320  Q
    |||||||||||||||||||||| |||| ||| ||||| |||| ||||| |||||||||||||||||| ||||  ||   |||||| || |||||||||||    
T  38602718 ttaaacgttttaaaatggtcctctatcttttattttagtcataaatttggtcatattttattaattttaaactcctcaaaaagaagacagttggataaaa 38602817  T
Q  321 ggaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttc 371  Q
     ||  | |||||||||||| | |||||||||      ||||||||||||||||||||    
T  38602818 -gatattcatcagatctaacaatgtatcaccaacacttaatttatatcactttcttc 38602873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 38473262 - 38473221
Alignment:
Q  426 atcactacacctccaatttcttaaatccagaaatcatcaaca 467  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38473262 atcactacacctccaattttttaaatccagaaatcatcaaca 38473221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 8359474 - 8359409
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    ||||| |||||||||||||| ||||||||| ||||| |||||| ||| ||| |||||||| |||||    
T  8359474 ttaaaagttttaaaatggtcttttatctttgttttagtcatcattttggtcctattttataaattt 8359409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 301416 - 301499
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa 306  Q
    ||||||||| ||||||| || ||| ||||| |||||  |||||||||  || |||||||||||||| ||||||||  |||||||    
T  301416 ttaaacgttataaaatgatcttttctctttgttttagccatcaatttgatcctattttattaattttaaacctcttagaaagaa 301499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 4904280 - 4904355
Alignment:
Q  245 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 319  Q
    |||||||| |||| |||||| |||| |||||||||||||||||| |||  ||||  |||||| |||||||||||||    
T  4904280 ttatctttgttttcatcatcgatttggtcatattttattaattttaaatttctaaaaaagaagaccgttggataaa 4904355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 31204610 - 31204738
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||| ||||    
T  31204610 ttaaacgtttcaaaatggtcatttatctttattttaatcatcaatttggtcctattttattaattttaaactccttaaaaagaagaccgttggat-aaag 31204708  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    || ||||||||||||||| |||||||||||    
T  31204709 gatgtccatcagatctaacagtgtatcacc 31204738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 223 - 350
Target Start/End: Original strand, 21569306 - 21569433
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||| ||||| ||||||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  21569306 ttaaacgtttcaatttggtcatttatctttgttttcatcatctatttaatcatattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 21569404  T
Q  322 gaggtccatcagatctaaaagtgtatcac 350  Q
    |||||||||||||||||| ||||||||||    
T  21569405 gaggtccatcagatctaacagtgtatcac 21569433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 21570483 - 21570355
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||  || |||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  21570483 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttgatcctattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 21570385  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||| |||||||||||  ||||||||||    
T  21570384 gaggtctatcagatctaatcgtgtatcacc 21570355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 31205769 - 31205641
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||||||||||| ||||||| || ||||| |||||||||||||||||| ||||  ||   |||||| ||  |||||| ||||    
T  31205769 ttaaacgtttcaaaatggtcctttatctttgttttaattattaatttggtcatattttattaattttaaactccttaaaaagaagacatttggat-aaag 31205671  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    ||| ||||||||||||||  ||||||||||    
T  31205670 gagatccatcagatctaacggtgtatcacc 31205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 54823318 - 54823253
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||    
T  54823318 ttaaacgttttaaaatggtcctttatctttgttttagtcatcaatttgatcatattttattaattt 54823253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 44219080 - 44219014
Alignment:
Q  231 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctct 297  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||| |||| ||||||||    
T  44219080 tttaaattggtcctttatctttgtttttatcatcaatttggtcctattttattgattttaaacctct 44219014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 54822437 - 54822499
Alignment:
Q  226 aacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||  || ||||||||||||||    
T  54822437 aacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatcctattttattaattt 54822499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 44217629 - 44217690
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttatta 284  Q
    |||||||||||||  ||||| ||||||||| |||| ||||||||||| ||| ||||||||||    
T  44217629 ttaaacgttttaatttggtcttttatctttgttttcatcatcaatttggtcctattttatta 44217690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 47573704 - 47573608
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 319  Q
    |||||||||||||  |||||||| |||||| ||||  ||||| |||| |||||||||||||||||| ||| ||||   |||||| |||||||||||||    
T  47573704 ttaaacgttttaatttggtcctt-atctttgtttttgtcatcgatttggtcatattttattaattttaaatctctgaaaaagaagaccgttggataaa 47573608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 42698721 - 42698650
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacc 294  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||||||  |||||||| |||| |||||    
T  42698721 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttagtcccattttatttattttaaacc 42698650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 223 - 372
Target Start/End: Original strand, 38593087 - 38593241
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||||||      
T  38593087 ttaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagaccgttggataaa-- 38593184  T
Q  322 gaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttca 372  Q
    ||| |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  38593185 gagatccatcagatctaatagtgtatcaccaacacttaatttatatcactttcttca 38593241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 223 - 372
Target Start/End: Original strand, 38596683 - 38596837
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||||||      
T  38596683 ttaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagaccgttggataaa-- 38596780  T
Q  322 gaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttca 372  Q
    ||| |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  38596781 gagatccatcagatctaatagtgtatcaccaacacttaatttatatcactttcttca 38596837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 350
Target Start/End: Original strand, 10330762 - 10330888
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| ||||| ||   |||||| ||  |||||||||      
T  10330762 ttaaacgtttcaaaatggtcatttatctttgttttagccattaatttggtcctattttattaattttaaaccccttaaaaagaagactattggataaa-- 10330859  T
Q  322 gaggtccatcagatctaaaagtgtatcac 350  Q
    |||||| ||||||||||| ||||||||||    
T  10330860 gaggtctatcagatctaacagtgtatcac 10330888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 372027 - 371900
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 321  Q
    |||||||||| ||  || |||||||||||| |||| |||||||||||  || |||||||||||||| ||||||||   |||||  || ||||||| ||||    
T  372027 ttaaacgtttcaatttgatcctttatctttgttttcatcatcaatttgatcctattttattaattttaaacctctcaaaaagatgactgttggat-aaag 371929  T
Q  322 gaggtccatcagatctaaaagtgtatcac 350  Q
    ||||| ||||||||||||  |||||||||    
T  371928 gaggttcatcagatctaacggtgtatcac 371900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 38594107 - 38593956
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||||||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| |||| | |   |||||| |  ||||||| ||||    
T  38594107 ttaaacgttttaaaatggtcatttatctttattttagacataaatttggtcctattttattaattttaaacttatcaaaaagaagattgttggat-aaag 38594009  T
Q  322 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 372  Q
    ||||||||||||||||    ||||||      |||||||||||||||||||||||||    
T  38594008 gaggtccatcagatct----gtgtatcaccaacacctaatttatatcactttcttca 38593956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 38597703 - 38597552
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||||||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| |||| | |   |||||| |  ||||||| ||||    
T  38597703 ttaaacgttttaaaatggtcatttatctttattttagacataaatttggtcctattttattaattttaaacttatcaaaaagaagattgttggat-aaag 38597605  T
Q  322 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 372  Q
    ||||||||||||||||    ||||||      |||||||||||||||||||||||||    
T  38597604 gaggtccatcagatct----gtgtatcaccaacacctaatttatatcactttcttca 38597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 351
Target Start/End: Original strand, 370831 - 370951
Alignment:
Q  231 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtcca 329  Q
    |||||| ||||| ||||||||| |||| |||||||||||  || ||||||||| |||| |||||||||  ||| || |||||||||| ||| |||||| |    
T  370831 tttaaattggtcatttatctttgtttttatcatcaatttgatcctattttattgattttaaacctctaaaaaataagaccgttggat-aaatgaggtcta 370929  T
Q  330 tcagatctaaaagtgtatcacc 351  Q
    ||| ||||||  ||||||||||    
T  370930 tcaaatctaatggtgtatcacc 370951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 50002469 - 50002597
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    ||||||||||  |||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||  || | |||||| | |||||||| ||||    
T  50002469 ttaaacgtttcgaaatggtcctttatgtttgttttaatcatcaatttagtcctattttattaattttaaactccttcaaaagaagatcgttggat-aaag 50002567  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    ||| ||||||||||||||  ||||||||||    
T  50002568 gagatccatcagatctaacggtgtatcacc 50002597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 50003283 - 50003155
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||| ||||  ||   ||| || |||||||||| ||||    
T  50003283 ttaaacgtttcaaaatggtcctttatgtttgttttaatcatcaatttggtcctattttattaattttaaactccttaaaaataagaccgttggat-aaag 50003185  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||| |||||||||||  ||||||||||    
T  50003184 gaggtcaatcagatctaacggtgtatcacc 50003155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 21248317 - 21248189
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||| |||||||||||||| ||||||||   |||||| || |||||||  |||    
T  21248317 ttaaacgtttcaaaatggtcccttatctttgttttagtcattattttggtcctattttattaattttaaacctcttaaaaagaagactgttggat-taag 21248219  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||||||| |||||||  ||||||||||    
T  21248218 gaggtccatcggatctaacggtgtatcacc 21248189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 27225490 - 27225617
Alignment:
Q  224 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 322  Q
    ||||||||| ||  |||| |||||| ||| ||||  |||||||||||||| |||||||||||||| |||||| |   |||||| |||||||||| ||||     
T  27225490 taaacgtttcaatttggttctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaacctttcaaaaagaagaccgttggat-aaaga 27225588  T
Q  323 aggtccatcagatctaaaagtgtatcacc 351  Q
    | |||||||||||||||| ||||||||||    
T  27225589 aagtccatcagatctaaaggtgtatcacc 27225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 229 - 350
Target Start/End: Original strand, 5409400 - 5409521
Alignment:
Q  229 gttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtc 327  Q
    |||||||  ||||||||||||||| |||| |||||||||||  ||  ||||||||||||| ||||||||   |||||| |||||||||| |||||||||     
T  5409400 gttttaatttggtcctttatctttgttttcatcatcaatttgatccaattttattaattttaaacctcttaaaaagaagaccgttggat-aaaggaggtt 5409498  T
Q  328 catcagatctaaaagtgtatcac 350  Q
    |||||||| |||  |||||||||    
T  5409499 catcagatttaacggtgtatcac 5409521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 27226598 - 27226478
Alignment:
Q  224 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 322  Q
    ||||||||| ||  ||||||||||| ||| |||| ||||||||||| ||| |||||||||||||| ||||| ||   |||||| | |||||||| |||||    
T  27226598 taaacgtttcaatttggtcctttatgtttgttttcatcatcaatttggtcctattttattaattttaaacccctcaaaaagaagatcgttggat-aaagg 27226500  T
Q  323 aggtccatcagatctaaaagtg 344  Q
    |||||||| |||||||| ||||    
T  27226499 aggtccataagatctaacagtg 27226478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 55387706 - 55387641
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 288  Q
    ||||||||||||| ||| || ||||||||| |||||||||||||||| ||||||||||||| ||||    
T  55387706 ttaaacgttttaagatgatcttttatctttgttttaatcatcaatttggtcatattttattgattt 55387641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 351
Target Start/End: Original strand, 45730714 - 45730820
Alignment:
Q  245 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtccatcagatctaaaagt 343  Q
    |||||||| |||| |||||| |||||||| |||||||||||||| ||| |  ||  |||||| |||||||||| |||||| || ||||| ||||||  ||    
T  45730714 ttatctttgttttcatcatcgatttagtcctattttattaatttgaaatccataaaaaagaagaccgttggat-aaaggaagttcatcatatctaaccgt 45730812  T
Q  344 gtatcacc 351  Q
    ||||||||    
T  45730813 gtatcacc 45730820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 350
Target Start/End: Original strand, 5384479 - 5384604
Alignment:
Q  225 aaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagga 323  Q
    |||||||| ||  ||||||| ||||||| |||| | ||||||||| |||  ||||||||||||| ||||||||   |||||| ||||| |||| ||| ||    
T  5384479 aaacgtttcaatttggtcctctatctttgttttcaacatcaatttggtccaattttattaattttaaacctcttaaaaagaagaccgtgggat-aaatga 5384577  T
Q  324 ggtccatcagatctaaaagtgtatcac 350  Q
    ||| |||||||| |||  |||||||||    
T  5384578 ggttcatcagatttaacggtgtatcac 5384604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 21247292 - 21247362
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 293  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||  |||||||||||||| ||||    
T  21247292 ttaaacgtttcaaaatggtcccttatctttgttttagtcataattttggttctattttattaattttaaac 21247362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 23153690 - 23153563
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||   |||||| || ||||||| ||||    
T  23153690 ttaaacgtttcaatttggtcatttatctttgtttttatcatcaatttaatcatattttattaattttaaacctctcaaaaagaagactgttggat-aaag 23153592  T
Q  322 gaggtccatcagatctaaaagtgtatcac 350  Q
    ||||||||||||||||||  |||||||||    
T  23153591 gaggtccatcagatctaacggtgtatcac 23153563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 35044675 - 35044804
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtca-tattttattaatttcaaacctctacgaaagaa-accgttggataaaa 320  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| |||| | |||||||||||| |||   ||   |||||| |||||||||| |||    
T  35044675 ttaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttggtcatttttttattaattttaaaatccttaaaaagaagaccgttggat-aaa 35044773  T
Q  321 ggaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||||||| |||||||| |||||||||||    
T  35044774 ggaggtccattagatctaagagtgtatcacc 35044804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 36584965 - 36584837
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||| | ||   || ||| |||||||||| ||||    
T  36584965 ttaaacatttcaaaatggtcctttatctttattttagtcatcaatttggtcatattttattaattttaaagcccttaaaacgaagaccgttggat-aaag 36584867  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    ||||||||| | |||||| |||| ||||||    
T  36584866 gaggtccattatatctaagagtggatcacc 36584837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 47536902 - 47536782
Alignment:
Q  231 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtcca 329  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||| |||| |||| |||   |||||| |||||||||||||| |||||| |    
T  47536902 tttaaattggtcctttatctttgtttttatcatcaatttggtcctattttattgattttaaacttctcaaaaagaagaccgttggataaaa-gaggtcta 47536804  T
Q  330 tcagatctaaaagtgtatcacc 351  Q
    ||||||||||  ||||||||||    
T  47536803 tcagatctaatggtgtatcacc 47536782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 350
Target Start/End: Original strand, 47535715 - 47535842
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 321  Q
    |||||||||| ||  ||||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||   |||||  || ||||||| ||||    
T  47535715 ttaaacgtttcaatttggtcctttatctttgtttttatcatcaatttggtcctattttattaattttaaacctctcaaaaagatgactgttggat-aaag 47535813  T
Q  322 gaggtccatcagatctaaaagtgtatcac 350  Q
    ||| ||||||||||||||  |||||||||    
T  47535814 gagatccatcagatctaacggtgtatcac 47535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 43704512 - 43704398
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||||||||||| ||||| |||||| |||| || |||||||||||||| ||||| ||   |||||| |||||||||| ||||    
T  43704512 ttaaacgtttcaaaatggtcctttatctttgttttagtcatcattttaatcctattttattaattttaaaccccttaaaaagaagaccgttggat-aaag 43704414  T
Q  322 gaggtccatcagatct 337  Q
    ||| |||||| |||||    
T  43704413 gagatccatcggatct 43704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 339
Target Start/End: Complemental strand, 35045954 - 35045838
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||  || |||||||||||||| ||||  ||   |||||| |||||||||| ||||    
T  35045954 ttaaacgtttcaaaatggtcatttatctttgttttaatcatcaatttgatcctattttattaattttaaactccttaaaaagaataccgttggat-aaag 35045856  T
Q  322 gaggtccatcagatctaa 339  Q
    ||| |||||| |||||||    
T  35045855 gagatccatcggatctaa 35045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 40321125 - 40321253
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| | | | |||||||||||| |||    |   |||||| |||||||||| ||||    
T  40321125 ttaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttgggccttttttattaattttaaaatcattaaaaagaagaccgttggat-aaag 40321223  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    ||||||||| |||||||| |||||||||||    
T  40321224 gaggtccattagatctaacagtgtatcacc 40321253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 42520289 - 42520405
Alignment:
Q  235 aaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaag-aaaccgttggataaaaggaggtccatcag 333  Q
    |||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||| |||||  |   |||| | |||||||||| |||||||||| |||||    
T  42520289 aaatggtcctgtatctttgttttagtcatcaattttgtcatattttatcaattttaaacccattaaaaagtagaccgttggat-aaaggaggtctatcag 42520387  T
Q  334 atctaaaagtgtatcacc 351  Q
    ||||||  ||||||||||    
T  42520388 atctaacggtgtatcacc 42520405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 42521318 - 42521190
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| ||||||||||| || |||| ||||| |||||||||| ||| |||||||| ||||| |||   ||   ||| || |||||||||| ||||    
T  42521318 ttaaacgtttcaaaatggtcctctacctttgttttagtcatcaatttggtcctattttatcaattttaaaatccttaaaaataagaccgttggat-aaag 42521220  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||||||| ||||||| |||||||||||    
T  42521219 gaggtccatcggatctaacagtgtatcacc 42521190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 40322295 - 40322225
Alignment:
Q  224 taaacgtttt-aaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 293  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||  || |||||||||||||| ||||    
T  40322295 taaacgttttcaaaatggtcttttatctttgttttaatcatcaatttgatcctattttattaattttaaac 40322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 43703109 - 43703237
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    ||||| |||||||||||||| ||||||| |  ||| ||||||||||| ||  |||||||||||||| |||  |||   |||||| |||||||||| ||||    
T  43703109 ttaaatgttttaaaatggtcttttatctatgctttcatcatcaatttggtactattttattaattttaaatttcttaaaaagaagaccgttggat-aaag 43703207  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    ||||| |||| |||||||  ||||||||||    
T  43703208 gaggtgcatcggatctaacggtgtatcacc 43703237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 40881168 - 40881245
Alignment:
Q  245 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||| ||||  |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||||    
T  40881168 ttatctttatttttgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaaag 40881245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 41767224 - 41767096
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||| |||||||||||||| ||||||||   |||||| || |||||||  |||    
T  41767224 ttaaacgtttcaaaatggtcccttatctttattttagtcattattttggtcctattttattaattttaaacctcttaaaaagaagactgttggat-taag 41767126  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    |||||||||| |||||||  ||||||||||    
T  41767125 gaggtccatcggatctaacggtgtatcacc 41767096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 44770674 - 44770550
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    ||||| ||||||||||||||||||| |||| ||||| ||||||||||  || |||||||||||||| ||||| ||   |||||| |||||||||| |||     
T  44770674 ttaaatgttttaaaatggtcctttagctttgttttagtcatcaatttgatcctattttattaattttaaaccccttaaaaagaagaccgttggat-aaat 44770576  T
Q  322 gaggtccatcagatctaaaagtgtat 347  Q
    |||||| ||| ||||||| |||||||    
T  44770575 gaggtctatcggatctaacagtgtat 44770550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 43416028 - 43415957
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacc 294  Q
    |||||||||| ||||||||| ||||||||| ||||| |||||| |||||||  ||||||||||||| |||||    
T  43416028 ttaaacgtttcaaaatggtcttttatctttgttttagtcatcattttagtccgattttattaattttaaacc 43415957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 44769749 - 44769862
Alignment:
Q  237 atggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtccatcagat 335  Q
    |||||| ||||||||| ||||| ||||||||||  ||||||||||||||||| ||| | ||   || ||| || |||||||  |||||||||||||| ||    
T  44769749 atggtcatttatctttgttttagtcatcaatttgatcatattttattaattttaaaacccttaaaatgaagactgttggat--aaggaggtccatcatat 44769846  T
Q  336 ctaaaagtgtatcacc 351  Q
    |||| |||||||||||    
T  44769847 ctaacagtgtatcacc 44769862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 12820158 - 12820031
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||||||||  |||||||| |||||| ||||  || || |||| ||| |||||||||||||| ||| ||||   |||||| |||||||||| ||||    
T  12820158 ttaaacgttttaatttggtcctt-atctttgttttcgtcgtcgatttggtcctattttattaattttaaatctctcaaaaagaagaccgttggat-aaag 12820061  T
Q  322 gaggtccatcagatctaaaagtgtatcacc 351  Q
    ||||| ||||| ||||||  ||||||||||    
T  12820060 gaggttcatcatatctaactgtgtatcacc 12820031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 43414437 - 43414498
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttatta 284  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||| ||  ||||||||||    
T  43414437 ttaaacgtttcaaaatggtcctttatctatgttttcatcatcaatttggtactattttatta 43414498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 23768545 - 23768471
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctcta 298  Q
    ||||| |||||||| |||||||| |||||| ||||  |||||||||| ||| |||||||||||||| ||| |||||    
T  23768545 ttaaatgttttaaattggtcctt-atctttgttttcgtcatcaatttggtcctattttattaattttaaatctcta 23768471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 9189450 - 9189546
Alignment:
Q  223 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 319  Q
    |||||||||| ||  |||||||| |||||| |||   |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||    
T  9189450 ttaaacgtttcaatttggtcctt-atctttgtttctgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaa 9189546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 32157 - 32285
Alignment:
Q  222 gttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaa 320  Q
    ||||||||||||||| ||||  ||||||||| |||||  ||||||||| ||| |||||||||||||| ||||| ||  ||||||| ||  |||||||||     
T  32157 gttaaacgttttaaattggttatttatctttgttttagccatcaatttggtcctattttattaattttaaaccccttagaaagaagactattggataaa- 32255  T
Q  321 ggaggtccatcagatctaaaagtgtatcacc 351  Q
     |||| ||||||||||||| | |||||||||    
T  32256 -gaggcccatcagatctaacaatgtatcacc 32285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 27886 - 28016
Alignment:
Q  222 gttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaaacc---gttggataa 318  Q
    ||||||||||| ||||||||| ||||||||| |||||  |||||| || ||| |||||||||||||| ||| | ||   ||||||  |    ||||||||    
T  27886 gttaaacgtttcaaaatggtcatttatctttgttttagccatcaagttggtcctattttattaattttaaatcccttaaaaagaagactattttggataa 27985  T
Q  319 aaggaggtccatcagatctaaaagtgtatcacc 351  Q
    |  ||||||||||||||||||||||||||||||    
T  27986 a--gaggtccatcagatctaaaagtgtatcacc 28016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 85115 - 85038
Alignment:
Q  245 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 321  Q
    |||||||| ||||  |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||||    
T  85115 ttatctttatttttgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaaag 85038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 48182 - 48147
Alignment:
Q  432 acacctccaatttcttaaatccagaaatcatcaaca 467  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48182 acacctccaatttcttaaatccagaaatcgtcaaca 48147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University