View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6902_high_2 (Length: 421)
Name: NF6902_high_2
Description: NF6902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6902_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 2588296 - 2588688
Alignment:
| Q |
17 |
agtaaggatattggtccaccaccttataaaaagccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaa |
116 |
Q |
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| T |
2588296 |
agtaaggatattggtccaccaccttataaaaagccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacatatgtctccaa |
2588395 |
T |
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| Q |
117 |
atattcagaagattaagagtattgctagacgttcgaggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatga |
216 |
Q |
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| T |
2588396 |
atattcagaagattaagagtattgctagacgttcgaggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatga |
2588495 |
T |
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| Q |
217 |
agaaagattggcaagagaaatgtatcctgaatcattcttaaattcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtg |
316 |
Q |
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| T |
2588496 |
agaaagattggcaagagaaatgtatcctgaatcattcttaaaatcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtg |
2588595 |
T |
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| Q |
317 |
gaatgtgatgagcacaatctaggaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
409 |
Q |
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| T |
2588596 |
gaatgtgatgagcacaatctagaaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
2588688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 4153885 - 4153802
Alignment:
| Q |
32 |
ccaccaccttataaaaagccgcacgatctgaag-aaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctcc |
114 |
Q |
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| T |
4153885 |
ccaccaccttatagaaagccgcatgatttgaagaaaggtttggaaaatttatgttttggcagatgttatcaaacacatgtctcc |
4153802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 38052459 - 38052541
Alignment:
| Q |
32 |
ccaccaccttataaaaagccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctcc |
114 |
Q |
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| T |
38052459 |
ccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcc |
38052541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 20901741 - 20901826
Alignment:
| Q |
38 |
ccttataaaaagccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaaatattca |
123 |
Q |
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| T |
20901741 |
ccttatagaaagccgcataatctaaagaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttca |
20901826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 20920204 - 20920289
Alignment:
| Q |
38 |
ccttataaaaagccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaaatattca |
123 |
Q |
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||||||| ||||||||| |||| |||||||||||||| |||| ||||||| | || |||| ||||| |||||||| ||| |||| |
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| T |
20920204 |
ccttatagaaagccgcataatctaaagaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttca |
20920289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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