View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6902_low_10 (Length: 257)
Name: NF6902_low_10
Description: NF6902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6902_low_10 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 3017194 - 3017441
Alignment:
| Q |
1 |
gcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcact |
100 |
Q |
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| T |
3017194 |
gcccttaattaatacattgatttatgtattatcaataacagtggtaaaaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcact |
3017293 |
T |
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| Q |
101 |
ccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaat |
200 |
Q |
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| T |
3017294 |
ccatttcaaaaacatcaataagagaagatcaaaatgaacaattgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaat |
3017393 |
T |
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| Q |
201 |
gaaaatttggtccttttgctttagatttacaaaatgaacatgatgatg |
248 |
Q |
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| T |
3017394 |
gaaaatttggtccttttgctttagatttacaaaatgaacatgatgatg |
3017441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 34343468 - 34343715
Alignment:
| Q |
1 |
gcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcact |
100 |
Q |
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| T |
34343468 |
gcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcaaagtcacttcact |
34343567 |
T |
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| Q |
101 |
ccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaat |
200 |
Q |
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| T |
34343568 |
ccatatcaaaaacattaacaagagaagatcaaaatgagcagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaat |
34343667 |
T |
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| Q |
201 |
gaaaatttggtccttttgctttagatttacaaaatgaacatgatgatg |
248 |
Q |
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| T |
34343668 |
gaaaatttggtctttttgctttagatttacaaaatgaacatgatgatg |
34343715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 46420937 - 46420690
Alignment:
| Q |
1 |
gcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcact |
100 |
Q |
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| T |
46420937 |
gcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacatcagcaaagtcacttcact |
46420838 |
T |
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| Q |
101 |
ccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaat |
200 |
Q |
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| T |
46420837 |
ccatatcaaaaacattaacaagagaagatcaaaatgagcagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaat |
46420738 |
T |
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| Q |
201 |
gaaaatttggtccttttgctttagatttacaaaatgaacatgatgatg |
248 |
Q |
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| T |
46420737 |
gaaaatttggtctttttgctttagatttacaaaatgaacatgatgatg |
46420690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 37279399 - 37279171
Alignment:
| Q |
17 |
ttgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcactccatatcaaaaacatc |
116 |
Q |
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| T |
37279399 |
ttgatttatgtattatcaataacagtggtaacaatctcaaataaaaaactcggccctttaaaacttcagcaaagtcacttcactccatatcaaaaacatt |
37279300 |
T |
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| Q |
117 |
aataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaatgaaaatttggtccttt |
216 |
Q |
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| T |
37279299 |
aacaatagaagattaaaatgagcaattgattcaatggtttattaatttttggatttggaatagaaggggaacttaaggattaatgaaaattgggtctttt |
37279200 |
T |
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| Q |
217 |
tgctttagatttacaaaatgaacatgatg |
245 |
Q |
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| T |
37279199 |
tgctttagattgacaaaatgaacatgatg |
37279171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 3195 - 3264
Alignment:
| Q |
55 |
aaataacaaacttggccctttaaaacttcagcagagtcacttcactccatatcaaaaacatcaataagag |
124 |
Q |
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| T |
3195 |
aaataacaagctcgaccctttaaaacttcagcaacgttgcttcactccatatcaaaaccattaacaagag |
3264 |
T |
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