View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6902_low_11 (Length: 236)
Name: NF6902_low_11
Description: NF6902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6902_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 866794 - 867011
Alignment:
| Q |
10 |
agagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggt |
109 |
Q |
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| T |
866794 |
agagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggt |
866893 |
T |
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| Q |
110 |
cgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatga |
209 |
Q |
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| T |
866894 |
cgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatga |
866993 |
T |
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| Q |
210 |
tgtggttgaagatgatga |
227 |
Q |
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| T |
866994 |
tgaggttgaagatgatga |
867011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 1228071 - 1228288
Alignment:
| Q |
10 |
agagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228071 |
agagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggt |
1228170 |
T |
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| Q |
110 |
cgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatga |
209 |
Q |
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| T |
1228171 |
cgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatga |
1228270 |
T |
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| Q |
210 |
tgtggttgaagatgatga |
227 |
Q |
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| T |
1228271 |
tgaggttgaagatgatga |
1228288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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