View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6902_low_14 (Length: 210)
Name: NF6902_low_14
Description: NF6902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6902_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 53302133 - 53302327
Alignment:
| Q |
6 |
atggacatcatcccatcagggcaaacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcgga |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53302133 |
atggacatcataccatcagggcaaacagaaaggatacctttaagtctgcttttgcactattataggtttctaatagctctgatagccacccactgtcgga |
53302232 |
T |
|
| Q |
106 |
gctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53302233 |
gctgaagcagcaatactttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctaagtttc |
53302327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 47064335 - 47064141
Alignment:
| Q |
6 |
atggacatcatcccatcagggcaaacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcgga |
105 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47064335 |
atggacatcataccatcagggcaaatagaaaggatacctttaagtctgcttttgcactattacaggtttctaatagctctaatagccacccactgtcgga |
47064236 |
T |
|
| Q |
106 |
gctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
47064235 |
gctgaagcagcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttctttaaccctaagtttc |
47064141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 4683399 - 4683205
Alignment:
| Q |
6 |
atggacatcatcccatcagggcaaacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcgga |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683399 |
atggacatcataccatcagggcaaacagaaaggatacctttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcgga |
4683300 |
T |
|
| Q |
106 |
gctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4683299 |
gctaaagcagcaatagtttggttgtgcgtgacgggaaactgaccggcttctgtatcatcgaggaactaatatccatttcttcaatcctaagtttc |
4683205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 30268807 - 30269001
Alignment:
| Q |
6 |
atggacatcatcccatcagggcaaacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcgga |
105 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30268807 |
atggacatcataccatcagggcaaatagaaaggatacctttaagtctgcttttgcactattacaggtttctaatagctctaatagccacccactgtcgga |
30268906 |
T |
|
| Q |
106 |
gctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30268907 |
gctgaagcagcaatagtttggttgtgtgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctaagtttc |
30269001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 31332374 - 31332228
Alignment:
| Q |
54 |
cttttgcactattacaggtttctaatagctctgatagccacccactgtcggagctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgact |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31332374 |
cttttgcactattacaggtttctaatagctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaacagaccgact |
31332275 |
T |
|
| Q |
153 |
tctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
31332274 |
tctgtatcattgaggaactaatatccatttcttcaatcctaagtttc |
31332228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 31339104 - 31338958
Alignment:
| Q |
54 |
cttttgcactattacaggtttctaatagctctgatagccacccactgtcggagctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgact |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31339104 |
cttttgcactattacaggtttctaatagctctgatagccacccacagtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaacagaccgact |
31339005 |
T |
|
| Q |
153 |
tctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
31339004 |
tctgtatcattgaggaactaatatccatttcttcaatcctaagtttc |
31338958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 31481789 - 31481874
Alignment:
| Q |
114 |
gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||| |||| || |||||||| |||| || ||| |||||||||||||||||||||| ||||| |
|
|
| T |
31481789 |
gcaatattttggttctgcatgatgggaacctgatcggcttctgtaccatcaagaaaccaatatccatttcttcaaccctaagtttc |
31481874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 7404397 - 7404206
Alignment:
| Q |
9 |
gacatcatcccatcagggcaaacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcggagct |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7404397 |
gacatcataccatcagggcaaacagaaaggatacctttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcggagct |
7404298 |
T |
|
| Q |
109 |
gaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
7404297 |
aaagcagcaatagtttggttgtgcgtgacgggaaactgaccggcttctgtatcatcgaggaactaatatccatttcttcaatcctaagtttc |
7404206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 44142067 - 44142123
Alignment:
| Q |
29 |
aacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctct |
85 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| || |||| || | ||||||||||| |
|
|
| T |
44142067 |
aacataaaggatacctttaagtctgcttttgcccttttacgggctgctaatagctct |
44142123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 25640760 - 25640954
Alignment:
| Q |
6 |
atggacatcatcccatcagggcaaacagaaaggatacccttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactgtcgga |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
25640760 |
atggacatcataccatcagggcaaacagaaaggatacctttaagtctgcttttgcactattacaggtttctaatagctctgatagccacccactttcaga |
25640859 |
T |
|
| Q |
106 |
gctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
||| |||| | |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
25640860 |
gctaaagcagtaatagtttggttgtgcgtgacgggaaactgtccggcttctgtatcattgaggaactaatatccatttcttcaatcctaagtttc |
25640954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 27813686 - 27813804
Alignment:
| Q |
81 |
gctctgatagccacccactgtcggagctgaagc-gcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatcca |
179 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| || | | |||| ||||||| ||| |||||||| |
|
|
| T |
27813686 |
gctctgatagccacc-actgtcggagctgaagcagcaatagtttggttgtgcgtgacggaaaactgatcggcatttgtaccatcgagaaacaaatatcca |
27813784 |
T |
|
| Q |
180 |
tttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
27813785 |
tttcttcaaccctaagtttc |
27813804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30824856 - 30824900
Alignment:
| Q |
155 |
tgtatcatcgaggaactaatatccatttcttcaaccctatgtttc |
199 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30824856 |
tgtaccatcgaggaacaaatatccatttcttcaaccctaagtttc |
30824900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University