View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6902_low_5 (Length: 380)
Name: NF6902_low_5
Description: NF6902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6902_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 372
Target Start/End: Original strand, 13222950 - 13223326
Alignment:
| Q |
2 |
tttccatattcattcatattctggaccatcaacaagaccattcagacgcataaatcatttaagtactatgttcaa------acttaaaaataagaaagca |
95 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||| |
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| T |
13222950 |
tttccatattcattcatattctggaccgtcaacaagaccattcaaacgcataaatcatttaagtactatgttcaacttcaaactcaaaaataagaatgca |
13223049 |
T |
|
| Q |
96 |
catccaaatcttaaaataagcaaaacaagcaaataacaccagaaaatgaaattttaaaaatgaggaatcaagttcatacctcattcttcattgttgtaga |
195 |
Q |
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||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13223050 |
catccaaatcttagaataagcaaaacaagcagataacacacgaaaatgaaatttttaaaatgaagaatcaagttcatacctcattcttcattgttgtaga |
13223149 |
T |
|
| Q |
196 |
ttcttttgctttagcccatgcaccacttatcaacaatatcaatgaagaatcaagttcctttgcttttgcaaggcttttgattttcttacaagctacatcg |
295 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13223150 |
ttcttttgctttagcccaagcaccacttatcaacaatatcaatgaagaatcaagttcctttgcttttgcaaggcttttgattttcttacaagctacatcg |
13223249 |
T |
|
| Q |
296 |
atggaaggagaattaaggatatcatcaaatttggcctgtgctgcatctaacgtctccatattcatcagagtattatc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
13223250 |
atggaaggagaattaaggatatcatcaaatttggcctgcgcagcatctaacgtctccatattcatcagagtattatc |
13223326 |
T |
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