View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6902_low_6 (Length: 317)
Name: NF6902_low_6
Description: NF6902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6902_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 52 - 290
Target Start/End: Complemental strand, 4510807 - 4510570
Alignment:
| Q |
52 |
ttaaaagtaaaacctaacataaatcatgactttgatgacaacttcattaacacttagaggtatctacaactgtaaatgggtttgtatttaaacttcatta |
151 |
Q |
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| T |
4510807 |
ttaaaactaaaatctaacataaatcatgattttgatgacaacttcattaacacttagaggtatctatacctgtaaatgagtttgtatttaaacttcatta |
4510708 |
T |
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| Q |
152 |
actaaaaacacaatttcaaggtcagaaattcatgtttttgctagagtgaaccgtaactgagtacagagacatagtttacatactctggatcctctgccac |
251 |
Q |
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| T |
4510707 |
accaaaaactcaatttcaaagtcagaaattcatgtttttgctagagtgaaccgtaactgagtacag-ggcatagaataaatactctggatcctctgtcac |
4510609 |
T |
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| Q |
252 |
tttcctccttatcctcatagtctgtcatactctgctcca |
290 |
Q |
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| T |
4510608 |
tttcctcattatcctcacagtccgtcatactcttctcca |
4510570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 4507036 - 4507231
Alignment:
| Q |
15 |
tatcataagttagtaacacacatgaagggaaacccatttaaaagtaaaacctaacataaatcatgactttgatgacaacttcattaacacttagaggtat |
114 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4507036 |
tatcataagttattaacacacatggagggaaacccatttaaaagtaaaacctaacataaatcatgactttgatgacaacttcattaacactt--aggtat |
4507133 |
T |
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| Q |
115 |
ctacaactgtaaatgggtttgtatttaaacttcattaactaaaaacacaatttcaaggtcagaaattcatgtttttgctagagtgaaccgtaactgag |
212 |
Q |
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| T |
4507134 |
ctataactgtaaatgtgtttgtatttaaacttcattaaccaaaaattcaatttcaaagtcagaaattcatgtttttgctagagtgaaccgtaactgag |
4507231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 34736218 - 34736265
Alignment:
| Q |
226 |
tttacatactctggatcctctgccactttcctccttatcctcatagtc |
273 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34736218 |
tttacttactctggatcctctgccactttcctccttatcctcatagtc |
34736265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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