View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6903_high_10 (Length: 247)

Name: NF6903_high_10
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6903_high_10
NF6903_high_10
[»] chr7 (16 HSPs)
chr7 (1-235)||(25176320-25176553)
chr7 (13-81)||(43492246-43492314)
chr7 (21-80)||(39316345-39316404)
chr7 (39-109)||(27338228-27338298)
chr7 (8-73)||(5482447-5482511)
chr7 (13-106)||(5907794-5907885)
chr7 (13-74)||(19619993-19620054)
chr7 (21-110)||(26871737-26871825)
chr7 (21-106)||(34299795-34299880)
chr7 (21-81)||(38362249-38362309)
chr7 (13-75)||(24299175-24299237)
chr7 (23-81)||(46716173-46716231)
chr7 (20-77)||(24610889-24610946)
chr7 (70-106)||(27076232-27076268)
chr7 (70-106)||(27202033-27202069)
chr7 (13-105)||(44452086-44452176)
[»] chr4 (21 HSPs)
chr4 (143-235)||(4781078-4781170)
chr4 (21-79)||(49951742-49951800)
chr4 (13-104)||(23136551-23136642)
chr4 (33-104)||(41462020-41462091)
chr4 (19-102)||(53622278-53622359)
chr4 (13-102)||(53261531-53261620)
chr4 (11-79)||(2818355-2818423)
chr4 (21-113)||(52650742-52650834)
chr4 (39-106)||(24546778-24546844)
chr4 (11-113)||(8297833-8297935)
chr4 (13-81)||(17970804-17970873)
chr4 (13-81)||(21241121-21241189)
chr4 (21-80)||(27963166-27963226)
chr4 (20-80)||(49622997-49623057)
chr4 (10-77)||(36876098-36876165)
chr4 (21-75)||(45743315-45743369)
chr4 (21-79)||(50617492-50617550)
chr4 (39-108)||(24175468-24175537)
chr4 (21-106)||(47937833-47937917)
chr4 (47-111)||(32175397-32175461)
chr4 (10-54)||(53919889-53919933)
[»] chr8 (14 HSPs)
chr8 (13-104)||(1876526-1876617)
chr8 (13-112)||(44220754-44220851)
chr8 (20-100)||(2376779-2376859)
chr8 (13-80)||(11533227-11533294)
chr8 (19-106)||(31264966-31265053)
chr8 (13-81)||(12002261-12002329)
chr8 (46-106)||(24869383-24869443)
chr8 (19-79)||(30158112-30158172)
chr8 (67-106)||(40298850-40298889)
chr8 (21-79)||(18842307-18842365)
chr8 (39-105)||(25279899-25279965)
chr8 (33-106)||(27801290-27801363)
chr8 (21-74)||(37449541-37449594)
chr8 (13-81)||(14016911-14016979)
[»] chr1 (21 HSPs)
chr1 (19-104)||(33791789-33791874)
chr1 (10-104)||(39973863-39973957)
chr1 (21-115)||(40053253-40053347)
chr1 (19-116)||(35543453-35543550)
chr1 (13-106)||(49478781-49478875)
chr1 (10-106)||(3047836-3047932)
chr1 (11-65)||(1656446-1656500)
chr1 (13-119)||(48947160-48947266)
chr1 (23-80)||(37188576-37188633)
chr1 (21-81)||(42573821-42573881)
chr1 (39-106)||(5423816-5423883)
chr1 (19-106)||(34861262-34861349)
chr1 (13-106)||(16113888-16113981)
chr1 (10-106)||(31042970-31043066)
chr1 (10-106)||(33744176-33744272)
chr1 (21-64)||(290602-290645)
chr1 (14-65)||(51904614-51904665)
chr1 (21-79)||(27934781-27934839)
chr1 (10-80)||(48811928-48811998)
chr1 (21-106)||(48938-49023)
chr1 (21-106)||(31807832-31807917)
[»] chr3 (13 HSPs)
chr3 (21-102)||(48551013-48551094)
chr3 (21-111)||(45757893-45757983)
chr3 (19-75)||(12140145-12140201)
chr3 (11-104)||(24313522-24313615)
chr3 (20-80)||(28691975-28692035)
chr3 (19-112)||(54290827-54290920)
chr3 (12-80)||(25317800-25317868)
chr3 (19-109)||(43803936-43804025)
chr3 (10-79)||(37388403-37388472)
chr3 (38-75)||(45584395-45584432)
chr3 (21-105)||(11465677-11465761)
chr3 (44-108)||(50604020-50604084)
chr3 (21-77)||(54911199-54911255)
[»] chr5 (13 HSPs)
chr5 (11-75)||(38594973-38595037)
chr5 (8-107)||(10228288-10228385)
chr5 (33-106)||(8208148-8208221)
chr5 (11-77)||(14309129-14309195)
chr5 (20-113)||(34032141-34032234)
chr5 (13-80)||(4695067-4695134)
chr5 (8-62)||(27325863-27325917)
chr5 (33-107)||(30501204-30501278)
chr5 (33-107)||(30541547-30541621)
chr5 (21-74)||(21259470-21259523)
chr5 (61-105)||(10051700-10051744)
chr5 (19-75)||(17774332-17774388)
chr5 (36-80)||(39335665-39335709)
[»] chr2 (21 HSPs)
chr2 (21-80)||(4655013-4655072)
chr2 (14-81)||(24389668-24389735)
chr2 (10-102)||(6334713-6334805)
chr2 (11-75)||(9049192-9049256)
chr2 (22-111)||(21277517-21277606)
chr2 (20-104)||(30869613-30869695)
chr2 (19-80)||(33634848-33634909)
chr2 (19-105)||(6411424-6411510)
chr2 (13-79)||(12762915-12762981)
chr2 (19-81)||(12848522-12848584)
chr2 (13-81)||(3074074-3074143)
chr2 (10-106)||(13538364-13538461)
chr2 (13-82)||(30822764-30822833)
chr2 (13-106)||(565736-565830)
chr2 (21-61)||(42342541-42342581)
chr2 (19-106)||(32859754-32859841)
chr2 (13-55)||(431678-431720)
chr2 (10-100)||(8964368-8964457)
chr2 (21-79)||(33454964-33455022)
chr2 (10-111)||(2825997-2826098)
chr2 (21-82)||(6083954-6084015)
[»] chr6 (6 HSPs)
chr6 (20-106)||(13445782-13445868)
chr6 (19-107)||(33970376-33970464)
chr6 (39-81)||(1840977-1841019)
chr6 (21-103)||(3753147-3753229)
chr6 (13-54)||(29716809-29716850)
chr6 (10-106)||(6586458-6586553)
[»] scaffold0010 (1 HSPs)
scaffold0010 (21-81)||(26695-26755)
[»] scaffold0053 (1 HSPs)
scaffold0053 (21-81)||(5756-5816)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 25176320 - 25176553
Alignment:
Q  1 aatatggaccaatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaac 100  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||    
T  25176320 aatatggaccagtgcatcagaaattgaaaaatttgacattttaaaagaataattatctaatttaacatgtttaaagagtgccctagggacattcgttaac 25176419  T
Q  101 aagacctttaaaatatatatatctaacattgtagaaagaggtaggacctgaatttggtcaccaatgttgatgataaaagcattagggacaggcttaacag 200  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25176420 aagacctttaaaatatatatctata-cattgtagaaagaggtaggacctgaatttggtcaccaatgttgatgataaaagcattagggacaggcttaacag 25176518  T
Q  201 tgatccagtcatttcctttacgtacttgatgtcca 235  Q
    ||||||||||||||||||||||||||||| |||||    
T  25176519 tgatccagtcatttcctttacgtacttgaagtcca 25176553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 43492246 - 43492314
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||| |||||||| ||||||||||||||  ||||||||||||  |||||||  |||||||||||||||    
T  43492246 tgcattggaaattgtaaattttgacatttctaaagaataattacttaatttagaatgcttaaagagtgc 43492314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 39316345 - 39316404
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    |||||||||||||||||||| |  |||||||||||  |||||||| ||||||||||||||    
T  39316345 aaattgaaaattttgacattattgaagaataattacttaatttaatatgcttaaagagtg 39316404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 27338298 - 27338228
Alignment:
Q  39 ttttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagaccttt 109  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||   | | ||||||||| |||||||||||    
T  27338298 tttttaaagaataattttctaatttagcatgcttaaagagtgccccaagaacactcgttcacaagaccttt 27338228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 5482447 - 5482511
Alignment:
Q  8 accaatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgctta 73  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||  ||||||| ||| ||||    
T  5482447 accaatgcattggaaat-gaaaactttgacattttaaaagaataattacttaatttagcatactta 5482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 5907885 - 5907794
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||| ||||||  |||| |||||||||| |||| ||||||||  |||||||  |||||||||||||||  ||||| |||||||||||||||||    
T  5907885 tgcattggaaataaaaaagtttgacatttaaaaa-aataattacttaatttagaatgcttaaagagtgccctaggg-cactcgttaacaagacc 5907794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 19620054 - 19619993
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaa 74  Q
    ||||| |||||||||||| ||||||||||| |||||||||||   ||||||| |||||||||    
T  19620054 tgcattggaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaa 19619993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 26871825 - 26871737
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagaccttta 110  Q
    ||||| |||| ||| | ||||||||||||||||||  | ||||| |||||||||| ||||||   ||||||||||||||||| |||||||    
T  26871825 aaattcaaaacttttaaattttaaaagaataattactttatttagcatgcttaaatagtgct-ccgggacactcgttaacaataccttta 26871737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 34299795 - 34299880
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||||| ||||||||||| |||||||||||   |||| || |||||||||| |||||    ||| |||||||||||||||||    
T  34299795 aaattgaaaactttgacatttttaaagaataattgcttaatctagcatgcttaaaaagtgccccgggggcactcgttaacaagacc 34299880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 38362309 - 38362249
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    |||||||||| ||| | ||||| || ||||||||||||||||||| ||||||||| |||||    
T  38362309 aaattgaaaactttaatatttttaatgaataattatctaatttaaaatgcttaaaaagtgc 38362249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 24299175 - 24299237
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaa 75  Q
    ||||| ||||||| |||| ||||||||||| || ||||||||   ||||||||||||||||||    
T  24299175 tgcattggaaattaaaaaatttgacatttttaaggaataatttcttaatttaacatgcttaaa 24299237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 46716231 - 46716173
Alignment:
Q  23 attgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    |||||||| ||||| ||||| ||||||||||||| |||||||  ||| |||||||||||    
T  46716231 attgaaaactttgatatttttaaagaataattatttaatttagaatggttaaagagtgc 46716173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 24610889 - 24610946
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaaga 77  Q
    |||||| |||| ||| ||||||||||||||||||| | ||||||| |||| |||||||    
T  24610889 gaaattcaaaactttaacattttaaaagaataattgtttaatttagcatgtttaaaga 24610946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 27076232 - 27076268
Alignment:
Q  70 cttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||||| || ||||||||||||||||||||    
T  27076232 cttaaagagtgctctaaggacactcgttaacaagacc 27076268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 27202069 - 27202033
Alignment:
Q  70 cttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||||| || ||||||||||||||||||||    
T  27202069 cttaaagagtgctctaaggacactcgttaacaagacc 27202033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 44452086 - 44452176
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagac 105  Q
    ||||| ||||||||||| |||||| ||||| ||| ||||||||  |||||||  ||| |||||||||| | | ||| ||||||||||||||||    
T  44452086 tgcattggaaattgaaacttttgatatttttaaataataattacttaatttagaatgtttaaagagtg-tct-ggggcactcgttaacaagac 44452176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 4781170 - 4781078
Alignment:
Q  143 aggacctgaatttggtcaccaatgttgatgataaaagcattagggacaggcttaacagtgatccagtcatttcctttacgtacttgatgtcca 235  Q
    ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| || | |||| ||||||||||| |||||    
T  4781170 aggacctgaatttggtcaccaatattgatgatgaaagcatttgggacaggcttaactgtgatccaatcttctcctctacgtacttgaagtcca 4781078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 49951742 - 49951800
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  49951742 aaattgaaaactttgacattttaaaagaataattacttaatttagcatgcttaaagagt 49951800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 23136551 - 23136642
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    ||||| |||||||||||| ||| | ||||||||||||||||||  |||||||| || ||||| |||||||   | |||||||||||||||||    
T  23136551 tgcattggaaattgaaaacttttaaattttaaaagaataattacttaatttaatatacttaaggagtgcttcggagacactcgttaacaaga 23136642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 41462091 - 41462020
Alignment:
Q  33 ttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    ||||| |||||||||||||||||   ||| ||| ||||||||||||||||  ||||||||||||||||||||    
T  41462091 ttgactttttaaaagaataattactaaatataaaatgcttaaagagtgctccagggacactcgttaacaaga 41462020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 53622359 - 53622278
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaa 102  Q
    |||||||||||||||||||||||||||| || |||||  |||||||| ||| ||||||||||| || ||| |||||||||||||    
T  53622359 ggaaattgaaaattttgacattttaaaaaaaaaattacttaatttaagatgtttaaagagtgc-at-ggggcactcgttaacaa 53622278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 53261620 - 53261531
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaa 102  Q
    ||||| |||||||||||| ||| | ||||| ||||||||||||  ||||||| |||||||||||||||   | ||| |||||||||||||    
T  53261620 tgcattggaaattgaaaacttttaaatttttaaagaataattacttaatttagcatgcttaaagagtgtcctgggggcactcgttaacaa 53261531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 2818423 - 2818355
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    ||||||| ||||||||||  ||||||| ||||||||||||||||   |||||||| |||||||||||||    
T  2818423 aatgcattggaaattgaactttttgaccttttaaaagaataatttcttaatttaaaatgcttaaagagt 2818355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 52650742 - 52650834
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaaa 113  Q
    |||||||||||||||||||||  |||||||||||   ||||||| |||| |||||||||| |   | | ||||||||||||||||| ||||||    
T  52650742 aaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaagagtgttccggaggcactcgttaacaagacccttaaaa 52650834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 24546778 - 24546844
Alignment:
Q  39 ttttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||| |||||||||||  |||||||||||||||||||||||| | ||| | |||||||||||||||||    
T  24546778 tttttaaagaataatttcctaatttaacatgcttaaagagtgttctagag-cactcgttaacaagacc 24546844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 8297935 - 8297833
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagaccttta 110  Q
    ||||||| |||||||| ||   |||||||||||||||||||||||   |||||   |||||||||||||||    ||| ||||||||||||||||| |||    
T  8297935 aatgcattggaaattgtaacagttgacattttaaaagaataattactaaatttgggatgcttaaagagtgccccgggggcactcgttaacaagaccctta 8297836  T
Q  111 aaa 113  Q
    |||    
T  8297835 aaa 8297833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 17970873 - 17970804
Alignment:
Q  13 tgcatcggaaattgaaaat-tttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||| ||||||||||||  ||||| |||||||| |||||||||  ||||||| ||||||||||||||||    
T  17970873 tgcattggaaattgaaaaactttgatattttaaatgaataattacttaatttatcatgcttaaagagtgc 17970804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 21241189 - 21241121
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||| |||||||||||||||||| ||||| ||| ||| |||   |||||||||||| |||||||||||    
T  21241189 tgcattggaaattgaaaattttgatatttttaaaaaatcatttcttaatttaacatgtttaaagagtgc 21241121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 27963166 - 27963226
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaa-tttaacatgcttaaagagtg 80  Q
    |||||||||||||| | ||||||||||||||||||| ||| |||||||||  |||||||||    
T  27963166 aaattgaaaattttaatattttaaaagaataattatttaattttaacatgtgtaaagagtg 27963226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 49622997 - 49623057
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    ||||||||||||||||||||||| |  |||||||||  |||||||| ||||||||| ||||    
T  49622997 gaaattgaaaattttgacatttttatggaataattacttaatttaaaatgcttaaatagtg 49623057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 36876098 - 36876165
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaaga 77  Q
    ||||| || ||||||||||||  || |||||||||||||||| |||  ||||||| ||||||||||||    
T  36876098 caatgtattggaaattgaaaacatttacattttaaaagaatagttacttaatttagcatgcttaaaga 36876165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 45743369 - 45743315
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaa 75  Q
    |||||||||| ||||||||||| |||||||||||   ||||||||||| ||||||    
T  45743369 aaattgaaaactttgacatttttaaagaataatttcttaatttaacatacttaaa 45743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 50617550 - 50617492
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||  ||| |||||||||    
T  50617550 aaattgaaaagtttgacattttaaaaaaataattacttaatttataatgtttaaagagt 50617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 24175468 - 24175537
Alignment:
Q  39 ttttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctt 108  Q
    ||||||||||||| |||   ||||||  ||||||||||||||   || ||||||||||||||||||||||    
T  24175468 ttttaaaagaatatttactaaatttaggatgcttaaagagtgtcctaaggacactcgttaacaagacctt 24175537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 47937917 - 47937833
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||||| |||||| |||| ||||||||||||  |||||||  ||| ||||||||| ||   || ||||||||||||||||||    
T  47937917 aaattgaaaactttgacttttttaaagaataattacataatttagtatgtttaaagagtact-ccggcacactcgttaacaagacc 47937833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 32175461 - 32175397
Alignment:
Q  47 gaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaa 111  Q
    |||||||||  |||||||| ||||||||||||| |   | |||||||| ||||||||||||||||    
T  32175461 gaataattacttaatttaaaatgcttaaagagtacctcatggacactctttaacaagacctttaa 32175397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 53919933 - 53919889
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataatt 54  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||    
T  53919933 caatgcatcggaaattgaaatttttgacttttttatagaataatt 53919889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 1876526 - 1876617
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    ||| |||||||||||||||    
T  1876526 tgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatgcttaaagagtgccccgggggcactcgttaacaaga 1876617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 44220754 - 44220851
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaa 112  Q
    ||||| |||||||||||| ||||||||||||||||||||||||  |||||||||||||||  | ||||||   ||||||||||||||||||| |||||||    
T  44220754 tgcattggaaattgaaaactttgacattttaaaagaataattacttaatttaacatgctt--atagtgctccggggacactcgttaacaagaactttaaa 44220851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 2376779 - 2376859
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaac 100  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||||||  | |||  ||||||||||||    
T  2376779 gaaattgaaaactttgatatttttaaagaataattatttaatttaaaatgcttaaagagtattctagaaacactcgttaac 2376859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 11533294 - 11533227
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    ||||| |||||||||||| ||||||||||| |||||||||||   |||||||||||| ||||||||||    
T  11533294 tgcattggaaattgaaaactttgacatttttaaagaataatttattaatttaacatgtttaaagagtg 11533227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 31265053 - 31264966
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||   |||||| |||| ||||||||| |  |||||||| |||||||||||||||| | |||| |||||||||||||||||    
T  31265053 ggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgccacaggggcactcgttaacaagacc 31264966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 12002329 - 12002261
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||| |||||||||||| ||| ||||||| ||||||||||||  |||||||  || ||||||||||||    
T  12002329 tgcattggaaattgaaaacttttacatttttaaagaataattacttaatttagtatacttaaagagtgc 12002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 24869443 - 24869383
Alignment:
Q  46 agaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||  ||||||| |||| ||||||||||| | |||| |||||||||||||||||    
T  24869443 agaataattacttaatttagcatgtttaaagagtgccacaggggcactcgttaacaagacc 24869383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 30158112 - 30158172
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    ||||||| |||| ||| ||||||| ||||||||||||| |||||||  |||||||||||||    
T  30158112 ggaaattaaaaacttttacattttcaaagaataattatttaatttagaatgcttaaagagt 30158172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 40298889 - 40298850
Alignment:
Q  67 atgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  40298889 atgcttaaagagtgtcatagggacactcgttaacaagacc 40298850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 18842307 - 18842365
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    ||||| |||| ||||||||||| ||||||||||||  |||||||| ||| |||||||||    
T  18842307 aaattaaaaactttgacatttttaaagaataattacttaatttaaaatggttaaagagt 18842365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 25279965 - 25279899
Alignment:
Q  39 ttttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagac 105  Q
    |||| ||||||||| |  |||||||| |||||||||||||||   ||||| ||||||||||||||||    
T  25279965 tttttaaagaataacttcctaatttagcatgcttaaagagtgtcgtaggggcactcgttaacaagac 25279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 27801290 - 27801363
Alignment:
Q  33 ttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||| |||||||||||||||||   ||||||  ||| ||||||||||  || ||| |||||||||||||||||    
T  27801290 ttgactttttaaaagaataattactaaatttagaatgattaaagagtgtcatgggggcactcgttaacaagacc 27801363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 37449594 - 37449541
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaa 74  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||| ||| ||||    
T  37449594 aaattgaaaagtttgacattttaaaaaaataattacttaatttaaaatgtttaa 37449541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 14016911 - 14016979
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||| |||||||||||| ||| | ||||| ||||||| ||||  | ||||| ||||||||||||||||    
T  14016911 tgcattggaaattgaaaacttttaaattttgaaagaatcattactttatttagcatgcttaaagagtgc 14016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 33791789 - 33791874
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||| ||| ||||||||||  | |||||||||||||||||||||    
T  33791789 ggaaattgaaaaatttgacattttaaaagaataattacttaatttagcatacttaaagagtagtctagggacactcgttaacaaga 33791874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 39973957 - 39973863
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    |||||||| | |||||||||| ||| ||||||||||||||||||||  ||||||| ||||||||||||||||    | |||||||||||||||||    
T  39973957 caatgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaaagagtgccccggagacactcgttaacaaga 39973863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 40053347 - 40053253
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaaata 115  Q
    |||||||||| ||||||||||| |||||| ||||| ||||||||  ||||||||| |||||  ||| |||||||||||||||||||  |||||||    
T  40053347 aaattgaaaactttgacatttttaaagaacaattacctaatttagaatgcttaaaaagtgcactagagacactcgttaacaagacccataaaata 40053253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 35543453 - 35543550
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaaatat 116  Q
    |||||||||||| ||||| ||||||||| ||||||||  ||||||| |||||||||| ||||||  |  | ||||||||||||||||||||| |||||    
T  35543453 ggaaattgaaaactttgatattttaaaaaaataattacttaatttagcatgcttaaatagtgctccaaaggcactcgttaacaagacctttacaatat 35543550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 49478875 - 49478781
Alignment:
Q  13 tgcatcggaaattgaaaa-ttttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||| |||||||||||| ||||||||||| |||| ||||||||  ||| | |||||||||||||||| ||  || |||||||||||||||||||    
T  49478875 tgcattggaaattgaaaacttttgacatttaaaaaaaataattacttaactcaacatgcttaaagagtactccagagacactcgttaacaagacc 49478781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 3047932 - 3047836
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||| |||||| ||||| ||||||||||| |||||| |||||  ||||||| ||||||||||||||||    ||| ||||| |||||||||||    
T  3047932 caatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagtgccccgggggcactctttaacaagacc 3047836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 1656500 - 1656446
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaa 65  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  1656500 aatgcattggaaattgaaaattttgacatttttaaaaaataattatttaatttaa 1656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 48947266 - 48947160
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaa 112  Q
    ||||| |||||||||||| ||||||||||| ||| ||||||||  |||||||  ||||||||||| |||   |||| ||||||||||||| |||  || |    
T  48947266 tgcattggaaattgaaaactttgacatttttaaaaaataattacttaatttagtatgcttaaagaatgccccaggggcactcgttaacaaaacccatata 48947167  T
Q  113 atatata 119  Q
    |||||||    
T  48947166 atatata 48947160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 37188576 - 37188633
Alignment:
Q  23 attgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    |||||||||||||||||||| |  |||||||||| |||||||| ||||||||||||||    
T  37188576 attgaaaattttgacatttttattgaataattatttaatttaaaatgcttaaagagtg 37188633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 42573821 - 42573881
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||||||||  || ||||||||||||||||||||  ||||||| ||||||||||||||||    
T  42573821 aaattgaaaaccttaacattttaaaagaataattacttaatttagcatgcttaaagagtgc 42573881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 5423816 - 5423883
Alignment:
Q  39 ttttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||| ||||||||||| |||||||||| ||||||||||| |||| |||  ||| ||||||||||||||    
T  5423816 tttttaaagaataattttctaatttaaaatgcttaaagaatgctctagtaacattcgttaacaagacc 5423883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 34861262 - 34861349
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||||||  ||||||||||| ||| ||||||||  |||||||  |||||||||||||||    ||| |||||||||||||||||    
T  34861262 ggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgcccccggggcactcgttaacaagacc 34861349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 16113981 - 16113888
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||| |||||||||||| ||||||||||| ||| ||||||||  |||| ||  |||||||||||||||    | | |||||||||||||||||    
T  16113981 tgcattggaaattgaaaactttgacattttgaaaaaataattacttaatatagtatgcttaaagagtgccccggaggcactcgttaacaagacc 16113888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 31043066 - 31042970
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||| | |||||||||| ||||||||||| ||| ||||||||  |||||||  ||||||||||| ||     |||||| ||||||||||||||    
T  31043066 caatgcattgaaaattgaaaactttgacatttttaaaaaataattacttaatttagaatgcttaaagactgtgccggggacattcgttaacaagacc 31042970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 33744176 - 33744272
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||| | |||| ||||  |||||| |||||||| ||||||||  || ||||| ||||||||||||||||  |||| ||||| | |||||||||    
T  33744176 caatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtgctcaaggggcactcctaaacaagacc 33744272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 290645 - 290602
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaattta 64  Q
    |||||||||| ||||||||||||||||||||||||  |||||||    
T  290645 aaattgaaaactttgacattttaaaagaataattacttaattta 290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 51904614 - 51904665
Alignment:
Q  14 gcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaa 65  Q
    |||| |||||||||||| ||| ||||||||||||||||||||  ||||||||    
T  51904614 gcattggaaattgaaaactttaacattttaaaagaataattacttaatttaa 51904665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 27934781 - 27934839
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    ||||||||| |||||| ||||| ||| ||||||||| |||||||  |||||||||||||    
T  27934781 aaattgaaacttttgatatttttaaataataattatttaatttagaatgcttaaagagt 27934839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 48811998 - 48811928
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    |||||||| ||| |||||||  ||| || |||||||||||||||||  || ||||||| ||||||||||||    
T  48811998 caatgcattggagattgaaatattttactttttaaaagaataattacttattttaacaggcttaaagagtg 48811928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 48938 - 49023
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||||| ||| |||||||  |||||||||||  ||||||| |||| |||| |||||   |||||  ||||||||||||||||    
T  48938 aaattgaaaacttttacatttttcaagaataattacttaatttagcatgattaacgagtgtcctaggggaactcgttaacaagacc 49023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 31807832 - 31807917
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||||| | | ||||||| ||||||||||||  || ||||  ||||||||| ||||||   ||| |||||||||||||||||    
T  31807832 aaattgaaaactatcacatttttaaagaataattacttattttagaatgcttaaatagtgctccgggggcactcgttaacaagacc 31807917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 48551094 - 48551013
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaa 102  Q
    |||||||||| ||||||||||| |||||||||||   ||||||| ||||||||||||||||| | |||||||||||||||||    
T  48551094 aaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaaagagtgctctggggacactcgttaacaa 48551013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 45757983 - 45757893
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaa 111  Q
    |||||||||| ||||||||||| |||||||||||   ||||||||||||||||||||||| |   | ||||||||||||||||||| ||||    
T  45757983 aaattgaaaactttgacatttttaaagaataattgcttaatttaacatgcttaaagagtgatccggagacactcgttaacaagacccttaa 45757893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 12140201 - 12140145
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaa 75  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  12140201 ggaaattgaaaactttgacattttaaaagaataattatttaatttagcatgcttaaa 12140145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 24313615 - 24313522
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    ||||||| | |||||||||| ||||||||||| ||||||||||| | |||||||  ||| |||||||||||     ||||||||||||||||||    
T  24313615 aatgcattgaaaattgaaaactttgacatttttaaagaataattgtttaatttagaatgtttaaagagtgccccgaggacactcgttaacaaga 24313522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 28691975 - 28692035
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    ||||||||||| ||| ||||||||||||||||||||  |||||||| ||| ||||||||||    
T  28691975 gaaattgaaaactttaacattttaaaagaataattacttaatttaatatgtttaaagagtg 28692035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 54290827 - 54290920
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaa 112  Q
    ||||||||||   |||||| |||| ||||||||| |  |||||||| ||||||||||||||||    |||| |||||||||||||||| |||||    
T  54290827 ggaaattgaactgtttgacttttttaaagaataacttcctaatttatcatgcttaaagagtgccccggggatactcgttaacaagacccttaaa 54290920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 25317868 - 25317800
Alignment:
Q  12 atgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    |||||| |||||||||||| ||| | ||||||||||||||||||  | ||||| ||||||| |||||||    
T  25317868 atgcattggaaattgaaaacttttaaattttaaaagaataattactttatttagcatgcttgaagagtg 25317800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 43804025 - 43803936
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagaccttt 109  Q
    ||||||||||   |||||| |||| ||||||||| | || |||||| |||||||||||||| |   | |||||||||||||||||||||||    
T  43804025 ggaaattgaattgtttgacttttttaaagaataactttccaatttatcatgcttaaagagtacccga-ggacactcgttaacaagaccttt 43803936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 37388472 - 37388403
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    |||||||| | ||| |||||| ||| ||||||| ||||||||||||  |||||||||||  |||||||||    
T  37388472 caatgcattgaaaactgaaaaatttcacatttttaaagaataattacttaatttaacatatttaaagagt 37388403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 45584395 - 45584432
Alignment:
Q  38 attttaaaagaataattatctaatttaacatgcttaaa 75  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  45584395 attttaaaagaataattacttaatttaacatgcttaaa 45584432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 11465677 - 11465761
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagac 105  Q
    ||||||||  ||||||| |||| ||||||||||| | | ||| || || ||||||||||| | |  |||||||||||||||||||    
T  11465677 aaattgaagtttttgacttttttaaagaataatttttttattaaaaatccttaaagagtgttcttaggacactcgttaacaagac 11465761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 50604084 - 50604020
Alignment:
Q  44 aaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctt 108  Q
    ||||||||||||  |||||||  ||| |||||||||||  | | |||||||||||||||||||||    
T  50604084 aaagaataattacttaatttagaatggttaaagagtgccctggagacactcgttaacaagacctt 50604020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 54911255 - 54911199
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaaga 77  Q
    ||||| |||| ||| ||||||||||||||||||||| |||||||  ||| |||||||    
T  54911255 aaatttaaaactttaacattttaaaagaataattatttaatttagaatgtttaaaga 54911199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 38594973 - 38595037
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaa 75  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||    
T  38594973 aatgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatacttaaa 38595037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 10228385 - 10228288
Alignment:
Q  8 accaatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacct 107  Q
    |||| |||||||||||||||||| ||| | ||||| |||||||||||| ||   ||| |||||||||||||| |  ||||||||||||||||||||||||    
T  10228385 accagtgcatcggaaattgaaaacttttaaattttgaaagaataatta-ctttattagcatgcttaaagagtac-ctagggacactcgttaacaagacct 10228288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 8208221 - 8208148
Alignment:
Q  33 ttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||| |||||||||||||||| || ||||||| |||||||||||||||| |    ||||||||||||||||||    
T  8208221 ttgactttttaaaagaataattttcaaatttaaaatgcttaaagagtgctctgaaaacactcgttaacaagacc 8208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 14309129 - 14309195
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaaga 77  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||| ||  |||||||| |||||||||||    
T  14309129 aatgcattggaaattgaaaactttgatatttttaaagaataactacttaatttaatatgcttaaaga 14309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 34032141 - 34032234
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaaaa 113  Q
    ||||||||||  ||| || |||| ||||||||||||  || ||||  |||||||||||||||   | |||||||||||||||||||| ||||||    
T  34032141 gaaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtgccccaaggacactcgttaacaagacccttaaaa 34032234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 4695134 - 4695067
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    ||||| ||||||| |||| ||| | ||||| ||||||||||| | ||||||| |||||||||||||||    
T  4695134 tgcattggaaattaaaaactttaatatttttaaagaataattttttaatttagcatgcttaaagagtg 4695067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 27325863 - 27325917
Alignment:
Q  8 accaatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatt 62  Q
    |||| ||||| | |||||||||| ||||||||||| |||||||||||| ||||||    
T  27325863 accagtgcattgaaaattgaaaagtttgacatttttaaagaataattacctaatt 27325917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 30501204 - 30501278
Alignment:
Q  33 ttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacct 107  Q
    ||||| |||||||||||||||||   |||||   |||||||||||||||  | ||| ||||||||||||||||||    
T  30501204 ttgactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaagacct 30501278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 30541547 - 30541621
Alignment:
Q  33 ttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacct 107  Q
    ||||| |||||||||||||||||   |||||   |||||||||||||||  | ||| ||||||||||||||||||    
T  30541547 ttgactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaagacct 30541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 21259470 - 21259523
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaa 74  Q
    ||||| ||||||||||||| || ||||||||||| | ||||||||||| |||||    
T  21259470 aaattaaaaattttgacatctttaaagaataattttttaatttaacattcttaa 21259523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 10051744 - 10051700
Alignment:
Q  61 tttaacatgcttaaagagtgctatagggacactcgttaacaagac 105  Q
    ||||| || ||||||||||||  ||||||||||||||||||||||    
T  10051744 tttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 17774332 - 17774388
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaa 75  Q
    |||||||||||| ||||| ||||| ||||||||||||  | |||||| |||||||||    
T  17774332 ggaaattgaaaaatttgatatttttaaagaataattacttgatttaaaatgcttaaa 17774388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 39335709 - 39335665
Alignment:
Q  36 acattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    ||||||| ||||||||||||| |||||||| ||| ||||||||||    
T  39335709 acatttttaaagaataattatttaatttaaaatgtttaaagagtg 39335665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 4655013 - 4655072
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  4655013 aaattgaaaactttgatattttaaaaaaataattatctaatttagcatgcttaaagagtg 4655072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 24389668 - 24389735
Alignment:
Q  14 gcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    |||| |||||||||||| |||||||| |||||||||||||||  ||||||| ||||||||||||||||    
T  24389668 gcattggaaattgaaaactttgacatcttaaaagaataattacttaatttagcatgcttaaagagtgc 24389735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 6334713 - 6334805
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaa 102  Q
    |||||||| |||||||||||| ||||||||||| ||| ||||||| | ||||||| |||| |||||||||| |    ||||||||||||||||    
T  6334713 caatgcattggaaattgaaaactttgacatttttaaaaaataattttttaatttagcatgtttaaagagtgttccgaggacactcgttaacaa 6334805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 9049192 - 9049256
Alignment:
Q  11 aatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaa 75  Q
    ||||||| | |||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||    
T  9049192 aatgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaacatgcttaaa 9049256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 21277606 - 21277517
Alignment:
Q  22 aattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacctttaa 111  Q
    ||||||||| ||||||||||||||| ||||||||  |||||||| || ||||||||||| |   |   ||||||||||||||||||||||    
T  21277606 aattgaaaagtttgacattttaaaaaaataattacttaatttaaaatacttaaagagtgatgcggaagcactcgttaacaagacctttaa 21277517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 30869613 - 30869695
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaaga 104  Q
    ||||||||||| ||| ||||||| |||||||||  || ||||||| ||||||||||||||||  | | |||||||||||||||||    
T  30869613 gaaattgaaaactttaacatttttaaagaataa--atttaatttagcatgcttaaagagtgccctggagacactcgttaacaaga 30869695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 33634848 - 33634909
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtg 80  Q
    |||||||||||| ||| | |||||||| |||||||||| ||||||||||| |||||||||||    
T  33634848 ggaaattgaaaactttcatattttaaacgaataattatttaatttaacatccttaaagagtg 33634909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 6411424 - 6411510
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagac 105  Q
    |||||||||||| ||| | ||||||||||||||||||  | ||||| |||| ||||| |||||| | |  |||||||||||||||||    
T  6411424 ggaaattgaaaacttttaaattttaaaagaataattactttatttagcatgtttaaaaagtgctctggaaacactcgttaacaagac 6411510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 12762915 - 12762981
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    ||||| |||||||||||||||| |||||||  |||||||||||  |||||| | |||||||||||||    
T  12762915 tgcattggaaattgaaaattttaacattttttaagaataattacttaattttaaatgcttaaagagt 12762981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 12848522 - 12848584
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    |||||||||||| ||||||||| | |||||||| |||  |||||||| |||||||||||||||    
T  12848522 ggaaattgaaaactttgacattattaaagaatagttacttaatttaatatgcttaaagagtgc 12848584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 3074143 - 3074074
Alignment:
Q  13 tgcatcggaaattgaaaat-tttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||| ||||||||||||  ||||| |||||||| |||||||||  ||||||| ||||||||||||||||    
T  3074143 tgcattggaaattgaaaaactttgatattttaaatgaataattacttaatttatcatgcttaaagagtgc 3074074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 13538461 - 13538364
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctat-agggacactcgttaacaagacc 106  Q
    |||||||| ||||||||||   |||||  |||| ||||||||||| |||||||||  |||||||||||||||  |  ||| |||||||||||||||||    
T  13538461 caatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtgccctcgggggcactcgttaacaagacc 13538364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 30822764 - 30822833
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgct 82  Q
    ||||| |||||||||||| ||||||||||| ||| ||||||||  |||||||| | |||| |||||||||    
T  30822764 tgcattggaaattgaaaactttgacattttcaaaaaataattacttaatttaaaaagctttaagagtgct 30822833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 565736 - 565830
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaata--attatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||| |||||||||||| ||| ||||||| ||||||||   |||  ||||||| ||||||||||||||  | | |||||||||||||||||||||    
T  565736 tgcataggaaattgaaaactttcacatttttaaagaatacttttacttaatttagcatgcttaaagagt-atctcgggacactcgttaacaagacc 565830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 42342541 - 42342581
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaat 61  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  42342541 aaattgaaaattttgacatttttaaagaataattatttaat 42342581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 32859841 - 32859754
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||   |||||| |||| ||||||||| |  |||||||| |||| |||||||||||  | ||| |||||||||||||||||    
T  32859841 ggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtgccctgggggcactcgttaacaagacc 32859754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 431678 - 431720
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataatta 55  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||    
T  431678 tgcattggaaattgaaaattttaacatttttaaagaataatta 431720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 8964457 - 8964368
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaac 100  Q
    |||||||| |||||||||||  ||| || |||| ||||||||||||  |||||||  ||||||||| |||||| | | |||||||||||||    
T  8964457 caatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtgct-tggagacactcgttaac 8964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 33455022 - 33454964
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagt 79  Q
    |||||||||| ||||||||||| |||||||| ||   ||||||| ||||||||||||||    
T  33455022 aaattgaaaactttgacatttttaaagaatagtttcttaatttagcatgcttaaagagt 33454964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 2825997 - 2826098
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagaccttt 109  Q
    |||||||| |||||| ||||  ||| || |||| ||| |||||||   || ||||  ||||||||||||| | | |||||||||||||||||||||| ||    
T  2825997 caatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagtaccacagggacactcgttaacaagaccctt 2826096  T
Q  110 aa 111  Q
    ||    
T  2826097 aa 2826098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6083954 - 6084015
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgct 82  Q
    |||||||||| ||||| ||||||||| ||||||||   ||||||  ||||||||||||||||    
T  6083954 aaattgaaaactttgatattttaaaataataattactaaatttagtatgcttaaagagtgct 6084015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 13445782 - 13445868
Alignment:
Q  20 gaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    ||||||||||| ||| ||||||| |||||||| |||  ||||||| ||||||||||||||||    |||||||||||||||||||||    
T  13445782 gaaattgaaaactttcacatttttaaagaatacttacttaatttagcatgcttaaagagtgcaccggggacactcgttaacaagacc 13445868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 33970376 - 33970464
Alignment:
Q  19 ggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacct 107  Q
    ||||||| |||||||| | ||||| ||||||||||||| | |||||||||  |||||||||| | |  ||| |||| ||||||||||||    
T  33970376 ggaaattaaaaatttttaaattttgaaagaataattattttatttaacatatttaaagagtgttttgaggatactcattaacaagacct 33970464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 1841019 - 1840977
Alignment:
Q  39 ttttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    ||||||||||||||||||  ||||||| |||||||||||||||    
T  1841019 ttttaaaagaataattattaaatttaatatgcttaaagagtgc 1840977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 3753147 - 3753229
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaag 103  Q
    |||||||||| ||| | ||||| ||||||||||||  | ||||| |||||||||||||||  | |||| |||| |||||||||    
T  3753147 aaattgaaaacttttaaattttgaaagaataattactttatttatcatgcttaaagagtggcacaggggcacttgttaacaag 3753229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29716809 - 29716850
Alignment:
Q  13 tgcatcggaaattgaaaattttgacattttaaaagaataatt 54  Q
    ||||| |||||||||||| ||||||||||||||| |||||||    
T  29716809 tgcattggaaattgaaaactttgacattttaaaaaaataatt 29716850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 6586458 - 6586553
Alignment:
Q  10 caatgcatcggaaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgctatagggacactcgttaacaagacc 106  Q
    |||||||||||||||||||   | |||| |||| ||||| |||||  ||||||||  |||||||||||||||   |||| || ||||||||||||||    
T  6586458 caatgcatcggaaattgaactatctgactttttcaaagattaatttcctaatttagtatgcttaaagagtgccccaggg-caatcgttaacaagacc 6586553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 26755 - 26695
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    |||||||||| ||||||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  26755 aaattgaaaactttgacattttaaaataataattacttaatttagcatgcttaaagagtgc 26695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 5816 - 5756
Alignment:
Q  21 aaattgaaaattttgacattttaaaagaataattatctaatttaacatgcttaaagagtgc 81  Q
    |||||||||| ||||||||||| |||||| |||||  |||||||| || ||||||||||||    
T  5816 aaattgaaaactttgacatttttaaagaaaaattacttaatttaaaattcttaaagagtgc 5756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University