View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_high_5 (Length: 443)
Name: NF6903_high_5
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 39220830 - 39221261
Alignment:
| Q |
1 |
tggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaagaaatcttaacatctcccaaatggaagtgtgatgtgattatggaggaagaaaaa |
100 |
Q |
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| T |
39220830 |
tggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaagaaatcttaacatctcccaaatggaagtgtgatgtgattatggaggaagaaaaa |
39220929 |
T |
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| Q |
101 |
caagattttgcagctgatgatgatcccttgtcagcgtcgccgtcatcaagtcatcgaagtgactgtggttctccagattcttttgaatgttatccgaaca |
200 |
Q |
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| T |
39220930 |
caagattttgcagctgatgatgatcccttgtcagcgtcgccgtcatcaagtcatccaagtgactgtggttctccagattcttttgaatgttatccgaaca |
39221029 |
T |
|
| Q |
201 |
gcttaagcaaagcaaaagatactgatgaagccatggacttgtcagaatctgattctggtgttgcttctttgatgccactatctccttgtggcacttcttt |
300 |
Q |
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| T |
39221030 |
gcttaagcaaggcaaaagatactgatgaagccatggacttgtctgaatctgattctggtgttgcttctttgatgccactatctccttgtggcacttcttt |
39221129 |
T |
|
| Q |
301 |
tccttgttgttttccaagcagcagcccaagattcaattccaagtcgccaacactttcaccttcaagttctgattatgcgagttcgtttacattttcgcct |
400 |
Q |
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| T |
39221130 |
tccttgttgttttccaagcagcagcccaagattcaattccaagtcgccaacactttcaccttcaagttctgattatgcgagttcgtttacattttcgcct |
39221229 |
T |
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| Q |
401 |
tcctctaccaattggtctgacttgtcattcat |
432 |
Q |
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| T |
39221230 |
tcctctaccaattggtctgacttgtcattcat |
39221261 |
T |
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Back To:
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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 37348418 - 37348513
Alignment:
| Q |
337 |
ttccaagtcgccaacactttcaccttcaagttctgattatgcgagttcgtttacattttcgccttcctctaccaattggtctgacttgtcattcat |
432 |
Q |
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||||||||||| |||||||| ||||| | |||||||| || ||||| ||||||||||||||| | ||||| ||||||||||| ||||||||||| |
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| T |
37348418 |
ttccaagtcgctgacactttctccttccaattctgattgtgatagttcctttacattttcgcctgcatctacaaattggtctgatttgtcattcat |
37348513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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