View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6903_low_1 (Length: 682)

Name: NF6903_low_1
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6903_low_1
NF6903_low_1
[»] chr1 (2 HSPs)
chr1 (22-668)||(50081241-50081889)
chr1 (98-192)||(50556485-50556579)
[»] chr2 (3 HSPs)
chr2 (130-194)||(30312821-30312885)
chr2 (112-192)||(3594222-3594302)
chr2 (96-156)||(6421801-6421861)
[»] chr6 (4 HSPs)
chr6 (117-192)||(6071166-6071241)
chr6 (100-192)||(12092514-12092606)
chr6 (130-192)||(8481960-8482022)
chr6 (130-184)||(16454949-16455003)
[»] chr3 (3 HSPs)
chr3 (130-188)||(46546387-46546445)
chr3 (117-184)||(32462607-32462674)
chr3 (96-156)||(47964546-47964606)
[»] chr4 (4 HSPs)
chr4 (165-195)||(18975900-18975930)
chr4 (488-542)||(45834462-45834516)
chr4 (131-192)||(34544140-34544201)
chr4 (96-192)||(15841394-15841490)
[»] chr8 (1 HSPs)
chr8 (96-192)||(40991787-40991883)
[»] chr7 (1 HSPs)
chr7 (96-156)||(7517650-7517710)
[»] chr5 (1 HSPs)
chr5 (104-192)||(2828088-2828176)


Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 22 - 668
Target Start/End: Original strand, 50081241 - 50081889
Alignment:
Q  22 agtccttcaattcaatatgctccccttcaagactgcaagatcggtgaattgattattgcaattattgtgcagataccacacaagtgagttagataccaca 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50081241 agtccttcaattcattatgctccccttcaagactgcaagatcggtgaattgattattgcaattattgtgcagataccacacaagtgagttagataccaca 50081340  T
Q  122 ctttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttttcaacctnnnnnnnnnn--ctccattttt 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||    
T  50081341 ctttaattcaaaaccataaggcaataggtttatggaacatataatttataaagtgttcaacctccactttttcaacctaaaaaaaaaaaactccattttt 50081440  T
Q  220 tcaagcaatataacttctaaatcacgcaattagacaacaaatctctactttaagtgtgagtccttcaattcaatttgttccccctcaggcggaagctttt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50081441 tcaagcaatataacttctaaatcacgcaattagacaacaaatctctactttaagtgtgagtccttcaattcaatttgttccccctcagacggaagctttt 50081540  T
Q  320 acatccatatagacatacttgcaccatcattcgacttgtattggtcagaaagacttttgacataaggagttagttgaaccatgacagtgataccacaatt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50081541 acatccatatagacatacttgcaccatcattcgacttgtattggtcagaaagacttttgacataaggagttagttgaaccatgacggtgataccacaatt 50081640  T
Q  420 gggttacggaggagcccgaatgatcatccatattggattaagaacaatgagtttaaatatcttcttatttataaaacattcaacctcgatttttataaac 519  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  50081641 gggttacagaggagcccgaatgatcatccatgttggattaagaacaataagtttatatatcttcttatttataaaacgttcaacctcgatttttataaac 50081740  T
Q  520 aatatcagacttttaacctacacctactatacaacatctaagggtcatggcagatctctcattcatgctagtatgttggaaggatagatgacaagttaga 619  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50081741 aatattagacttttaacctacacgtactatacaacatctaagggtcatggcagatctctcattcatgctagtatgttggaaggatagatgacaagttaga 50081840  T
Q  620 aaatggccaatatcatttcaaaaactgttcgtccagacatgtgatgtcc 668  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50081841 aaatggccaatatcatttccaaaactgttcgtccagacatgtgatgtcc 50081889  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 50556579 - 50556485
Alignment:
Q  98 cacacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||  |||||||||| |||   | | | ||||||| |||||||||||| |||||    
T  50556579 cacacaagtgagagagataccaaacttttattcaaaaccttaagaaaataggtttacggattctctcacttataaattgttcaacctccgctttt 50556485  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 30312885 - 30312821
Alignment:
Q  130 caaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttttc 194  Q
    ||||||||||||| |||| ||||||||  ||| ||| ||||||||||||||||||||||||||||    
T  30312885 caaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactttttc 30312821  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 3594222 - 3594302
Alignment:
Q  112 agataccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||| |||||| | | |||||| ||||| |||||  ||||||||| | ||| | ||||||||||||| ||||||||||||    
T  3594222 agatatcacactcttactcaaaatcttaaagcaatgtgtttatggatcctatcacttataaagtgttcgacctccactttt 3594302  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 6421861 - 6421801
Alignment:
Q  96 accacacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatgg 156  Q
    ||||||||||| ||  ||| |||||||| | |  |||||||||||||||||||||||||||    
T  6421861 accacacaagttagagagacaccacactcttacccaaaaccttaaggcaataggtttatgg 6421801  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 6071241 - 6071166
Alignment:
Q  117 ccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||||| | || ||||| |||||||||||  ||||||||| ||| | | ||||||||||||||||||||||||||    
T  6071241 ccacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccactttt 6071166  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 12092514 - 12092606
Alignment:
Q  100 cacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||||||||  ||| |||||| | | | ||||||||||||||||||  ||||||||| | | | | |||||||||| |||||||||||||||    
T  12092514 cacaagtgagagagacaccacagtcttactcaaaaccttaaggcaatgagtttatggatcctctcacttataaagtgctcaacctccactttt 12092606  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 8482022 - 8481960
Alignment:
Q  130 caaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||| |||||||||||  |||||||   ||| | ||||||||||||||||||||||||||||    
T  8482022 caaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactttt 8481960  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 16455003 - 16454949
Alignment:
Q  130 caaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacct 184  Q
    |||||||||||||||||||||||||||  | ||| | |||||| |||||||||||    
T  16455003 caaaaccttaaggcaataggtttatgggtcctattacttataaggtgttcaacct 16454949  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 46546387 - 46546445
Alignment:
Q  130 caaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccac 188  Q
    ||||||||||||||||| ||||||||||   | ||| ||||||||||||||||||||||    
T  46546387 caaaaccttaaggcaatgggtttatggattctctaacttataaagtgttcaacctccac 46546445  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 32462607 - 32462674
Alignment:
Q  117 ccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacct 184  Q
    ||||||| | || ||||||||||| |||||||||||||||| ||| | | |||||| |||||||||||    
T  32462607 ccacactcttatccaaaaccttaaagcaataggtttatggatcatcttacttataaggtgttcaacct 32462674  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 47964546 - 47964606
Alignment:
Q  96 accacacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatgg 156  Q
    ||||||||||||||  |||  ||||||| | |  |||||||||||||||||||||||||||    
T  47964546 accacacaagtgagagagacgccacactcttacccaaaaccttaaggcaataggtttatgg 47964606  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 18975900 - 18975930
Alignment:
Q  165 atttataaagtgttcaacctccactttttca 195  Q
    |||||||||||||||||||||||||||||||    
T  18975900 atttataaagtgttcaacctccactttttca 18975930  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 45834516 - 45834462
Alignment:
Q  488 ttataaaacattcaacctcgatttttataaacaatatcagacttttaacctacac 542  Q
    |||||||| | |||||||| |||||| |||||||||| |||||||||||| ||||    
T  45834516 ttataaaataatcaacctccatttttctaaacaatatgagacttttaaccaacac 45834462  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 34544201 - 34544140
Alignment:
Q  131 aaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||||||||||||||  ||||||||  | | | |||||||||||| |||||||||||||||    
T  34544201 aaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactttt 34544140  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 15841394 - 15841490
Alignment:
Q  96 accacacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||||||||||||  ||| | |||||| | |  |||||||||||||||||  ||||||| | | | | | ||| ||||||||||||||||||||||    
T  15841394 accacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttcaacctccactttt 15841490  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 40991883 - 40991787
Alignment:
Q  96 accacacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    |||||||| ||||||| || ||||||  ||||  ||||||||| ||||| | |||||||||  | | | | |||| |||||||||||||||||||||    
T  40991883 accacacaggtgagttggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccactttt 40991787  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 7517710 - 7517650
Alignment:
Q  96 accacacaagtgagttagataccacactttaattcaaaaccttaaggcaataggtttatgg 156  Q
    ||||||||||||||  ||| |||||||| | |  ||||||||||||||||| |||||||||    
T  7517710 accacacaagtgagacagacaccacactcttacccaaaaccttaaggcaatgggtttatgg 7517650  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 2828176 - 2828088
Alignment:
Q  104 agtgagttagataccacactttaattcaaaaccttaaggcaataggtttatggaacatataatttataaagtgttcaacctccactttt 192  Q
    ||||||||||  | || |||||||  ||||||||||||||| |||  |||||||  || | | ||||||||||| ||||||||||||||    
T  2828176 agtgagttagtcatcaaactttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccactttt 2828088  T

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