View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_low_10 (Length: 373)
Name: NF6903_low_10
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 3362431 - 3362081
Alignment:
| Q |
18 |
tgaataaagttgtcctgtccaatcagatatgatgaaatgcacccctagtgaatagtgtaggaaacatgatttgaaaagtttgaacaaaccgcaattatta |
117 |
Q |
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| T |
3362431 |
tgaataaagttgtcctgtccaatcagatatgatgaaatgcacccctagtgaatagtgtaggaaacatgatttgaaaagtttgaacaaaccgcatatatta |
3362332 |
T |
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| Q |
118 |
aattatggttacggatgtgacttccattgttaaatgtttcattaattatttaatttatggatacaagtggtgttggtatgcactattttaattgttgttt |
217 |
Q |
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| T |
3362331 |
aattatggttacggatgtgacttccattgttaaatgtttcattaattatttaatttatggatacaagtggtgttggtatgcactattttaattgttgttt |
3362232 |
T |
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| Q |
218 |
gtgtgagtcattgaatgcatttgtggtttttggaattggaagcagtaatgtcattgaagaagaacaagaacaagatgttggtttggtttcacttgtactt |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3362231 |
gtgtgaatcattgaatgcatttgtggtttttggaattggaagcagtaatctcattgaagaagaacaagaacaagatgttggtttggtttcacttgtactt |
3362132 |
T |
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| Q |
318 |
tctccattgatcacattatttatttatt----tattcctttttgttctctg |
364 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3362131 |
tctccattgatcacattatttatttatttatttattcctttttgttctctg |
3362081 |
T |
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