View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6903_low_14 (Length: 250)

Name: NF6903_low_14
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6903_low_14
NF6903_low_14
[»] chr4 (24 HSPs)
chr4 (68-215)||(55730430-55730570)
chr4 (19-72)||(56339149-56339202)
chr4 (22-73)||(42775620-42775671)
chr4 (19-74)||(53760794-53760849)
chr4 (19-70)||(54566190-54566241)
chr4 (22-72)||(26251002-26251052)
chr4 (22-70)||(21012583-21012631)
chr4 (35-74)||(14982276-14982315)
chr4 (35-76)||(36456050-36456091)
chr4 (39-72)||(55266903-55266936)
chr4 (22-70)||(14982372-14982420)
chr4 (22-69)||(4441421-4441468)
chr4 (19-50)||(29091175-29091206)
chr4 (35-70)||(31742888-31742923)
chr4 (22-72)||(40338259-40338309)
chr4 (22-68)||(52295052-52295098)
chr4 (35-76)||(857363-857404)
chr4 (35-72)||(31473847-31473884)
chr4 (35-72)||(36455905-36455942)
chr4 (23-72)||(40548226-40548275)
chr4 (35-72)||(49111436-49111473)
chr4 (22-50)||(1539679-1539707)
chr4 (22-62)||(17727091-17727131)
chr4 (28-68)||(46243108-46243148)
[»] chr3 (22 HSPs)
chr3 (19-70)||(54761567-54761618)
chr3 (24-71)||(47714286-47714333)
chr3 (24-75)||(46429409-46429460)
chr3 (22-72)||(331991-332040)
chr3 (24-70)||(332070-332116)
chr3 (21-73)||(47284208-47284260)
chr3 (19-70)||(2104752-2104803)
chr3 (22-73)||(25655312-25655363)
chr3 (22-69)||(38506882-38506929)
chr3 (22-68)||(27485474-27485520)
chr3 (35-73)||(48947602-48947640)
chr3 (25-70)||(55460358-55460403)
chr3 (35-70)||(44692946-44692981)
chr3 (24-70)||(9007463-9007509)
chr3 (28-70)||(26547049-26547091)
chr3 (35-73)||(36398026-36398064)
chr3 (35-73)||(47767429-47767467)
chr3 (24-73)||(27251909-27251958)
chr3 (36-73)||(44692819-44692856)
chr3 (35-72)||(46672840-46672877)
chr3 (22-50)||(21307538-21307566)
chr3 (24-76)||(25655392-25655444)
[»] chr8 (25 HSPs)
chr8 (22-75)||(30444950-30445003)
chr8 (22-70)||(7202865-7202913)
chr8 (22-74)||(34008795-34008847)
chr8 (24-75)||(7202923-7202974)
chr8 (22-73)||(29611385-29611436)
chr8 (22-70)||(42739949-42739997)
chr8 (35-76)||(28324710-28324751)
chr8 (35-70)||(40046804-40046839)
chr8 (22-67)||(26520456-26520501)
chr8 (35-72)||(33902665-33902702)
chr8 (35-72)||(44889352-44889389)
chr8 (32-72)||(8409944-8409984)
chr8 (35-74)||(3853612-3853651)
chr8 (35-74)||(3858070-3858109)
chr8 (35-74)||(29257399-29257438)
chr8 (35-70)||(36103101-36103136)
chr8 (22-73)||(42711301-42711352)
chr8 (19-50)||(44889392-44889423)
chr8 (35-73)||(17110993-17111031)
chr8 (35-72)||(515580-515617)
chr8 (24-72)||(32626006-32626055)
chr8 (22-50)||(8049292-8049320)
chr8 (34-70)||(14799979-14800015)
chr8 (31-71)||(30435346-30435386)
chr8 (35-67)||(35979052-35979084)
[»] chr7 (25 HSPs)
chr7 (19-75)||(13814984-13815040)
chr7 (22-74)||(32650587-32650639)
chr7 (19-69)||(30587893-30587943)
chr7 (24-73)||(40853984-40854033)
chr7 (35-75)||(6498789-6498829)
chr7 (35-70)||(29065819-29065854)
chr7 (22-68)||(14790134-14790179)
chr7 (22-76)||(19865547-19865601)
chr7 (23-73)||(40667356-40667406)
chr7 (35-72)||(23548635-23548672)
chr7 (35-75)||(28539192-28539232)
chr7 (19-50)||(6498755-6498786)
chr7 (31-70)||(31913236-31913275)
chr7 (22-69)||(45984359-45984406)
chr7 (22-69)||(45988719-45988766)
chr7 (35-69)||(9784955-9784989)
chr7 (24-70)||(30080796-30080842)
chr7 (35-73)||(34398973-34399011)
chr7 (35-72)||(26162161-26162198)
chr7 (35-72)||(35455802-35455839)
chr7 (36-76)||(2057520-2057560)
chr7 (35-75)||(5644672-5644712)
chr7 (35-75)||(14603286-14603326)
chr7 (22-50)||(25189219-25189247)
chr7 (22-50)||(43791128-43791156)
[»] chr5 (20 HSPs)
chr5 (22-70)||(15270858-15270906)
chr5 (22-74)||(33146187-33146239)
chr5 (22-76)||(22305106-22305160)
chr5 (28-74)||(33146057-33146103)
chr5 (22-72)||(34105087-34105137)
chr5 (31-73)||(34982309-34982351)
chr5 (22-70)||(2550328-2550376)
chr5 (25-73)||(22302536-22302584)
chr5 (22-73)||(40643833-40643884)
chr5 (22-62)||(17542365-17542405)
chr5 (22-69)||(12064472-12064519)
chr5 (35-74)||(15373956-15373995)
chr5 (22-73)||(28490008-28490058)
chr5 (35-73)||(22303905-22303943)
chr5 (35-68)||(19533942-19533975)
chr5 (35-72)||(20523131-20523168)
chr5 (35-72)||(22766950-22766987)
chr5 (22-66)||(28489485-28489529)
chr5 (22-50)||(37241606-37241634)
chr5 (22-50)||(37722898-37722926)
[»] scaffold0039 (1 HSPs)
scaffold0039 (19-72)||(109047-109100)
[»] chr2 (23 HSPs)
chr2 (19-72)||(20935723-20935775)
chr2 (25-73)||(2924775-2924823)
chr2 (22-70)||(11684683-11684731)
chr2 (22-73)||(8736448-8736499)
chr2 (24-73)||(14537294-14537343)
chr2 (22-75)||(21504463-21504516)
chr2 (22-75)||(41585697-41585750)
chr2 (22-68)||(11607241-11607287)
chr2 (35-73)||(11716405-11716443)
chr2 (22-64)||(11824704-11824746)
chr2 (35-73)||(14365823-14365861)
chr2 (35-76)||(1583847-1583888)
chr2 (23-64)||(7684468-7684509)
chr2 (24-73)||(11824775-11824824)
chr2 (19-68)||(44205662-44205711)
chr2 (24-68)||(3345765-3345809)
chr2 (35-75)||(41461639-41461679)
chr2 (19-66)||(19231289-19231336)
chr2 (19-50)||(28740634-28740665)
chr2 (22-68)||(11595339-11595385)
chr2 (35-76)||(3092276-3092317)
chr2 (22-50)||(11532260-11532288)
chr2 (22-50)||(32839655-32839683)
[»] chr1 (27 HSPs)
chr1 (24-68)||(41822552-41822596)
chr1 (22-70)||(45565487-45565535)
chr1 (22-73)||(32572937-32572988)
chr1 (22-68)||(13181608-13181654)
chr1 (23-72)||(32128046-32128095)
chr1 (25-73)||(37214914-37214962)
chr1 (28-76)||(48953581-48953629)
chr1 (24-75)||(23536162-23536213)
chr1 (24-70)||(15245460-15245506)
chr1 (24-70)||(50471768-50471814)
chr1 (22-70)||(5474417-5474465)
chr1 (19-75)||(37447363-37447419)
chr1 (22-70)||(40264048-40264096)
chr1 (22-70)||(41823167-41823215)
chr1 (35-70)||(15034659-15034694)
chr1 (35-74)||(24273258-24273297)
chr1 (19-50)||(26501083-26501114)
chr1 (35-70)||(26501117-26501152)
chr1 (22-73)||(34007355-34007406)
chr1 (22-68)||(41822704-41822751)
chr1 (22-65)||(44571225-44571267)
chr1 (35-73)||(15034783-15034821)
chr1 (35-73)||(30190260-30190298)
chr1 (24-72)||(17502275-17502323)
chr1 (22-70)||(34007428-34007476)
chr1 (35-75)||(44410306-44410346)
chr1 (28-64)||(52135638-52135674)
[»] chr6 (12 HSPs)
chr6 (22-70)||(1195351-1195399)
chr6 (24-70)||(8475179-8475225)
chr6 (35-73)||(34245018-34245056)
chr6 (35-70)||(28918165-28918200)
chr6 (19-50)||(29889438-29889469)
chr6 (19-50)||(34244984-34245015)
chr6 (35-73)||(1368474-1368512)
chr6 (35-73)||(9285644-9285682)
chr6 (35-73)||(29889472-29889510)
chr6 (35-72)||(33733430-33733467)
chr6 (22-70)||(9285740-9285788)
chr6 (21-49)||(31412940-31412968)
[»] scaffold0240 (1 HSPs)
scaffold0240 (22-73)||(17592-17643)
[»] scaffold0301 (1 HSPs)
scaffold0301 (35-68)||(7153-7186)
[»] scaffold0065 (1 HSPs)
scaffold0065 (22-70)||(9593-9642)
[»] scaffold0048 (1 HSPs)
scaffold0048 (35-68)||(82945-82978)
[»] scaffold0009 (1 HSPs)
scaffold0009 (35-72)||(41995-42032)
[»] scaffold0169 (1 HSPs)
scaffold0169 (22-50)||(4113-4141)
[»] scaffold0027 (1 HSPs)
scaffold0027 (22-50)||(10924-10952)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 55730430 - 55730570
Alignment:
Q  68 tctaagagataaattacggtgtaaaaaatcaattccttactctatcaaaacaaaaattcctcatatttagtgttatgacacgtctcaaagnnnnnnnnnn 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  55730430 tctaagagataaattacggtgtaaaaaatcaattccttactctatcaaaacaaaaattcctcatatttagtgttatgacacgtctcaaag-------ttt 55730522  T
Q  168 nnnnnnnccgttatatatacatttcaatcaaataatgtttgatttctt 215  Q
           |||||||||||||||||||||||||||||||||||||||||    
T  55730523 tttttttccgttatatatacatttcaatcaaataatgtttgatttctt 55730570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 56339202 - 56339149
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  56339202 acatcaaagtatttgaattccctcaaaacattccatcatccaaacacactctaa 56339149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 42775671 - 42775620
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  42775671 tcaaagtatttgaattccctcaaaacattcccccatccaaacacactttaag 42775620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 53760794 - 53760849
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||    
T  53760794 acatcaaaatatttgaattccctcaaaacattcccccattcaaacacactctaaga 53760849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 54566241 - 54566190
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  54566241 acatcaaagtaattgaattccctcaaaacattctttcatccaaacacactct 54566190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 26251002 - 26251052
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  26251002 tcaaagtagttgaattccctcaaaacattcccccatccaaacacactctaa 26251052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21012583 - 21012631
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  21012583 tcaaaatatttaaattccctcaaaacattcgtccatccaaacacactct 21012631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 14982315 - 14982276
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaaga 74  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  14982315 attccctcaaaacattcctccatccaaacacactctaaga 14982276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 36456050 - 36456091
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  36456050 attccctcaaaacattcctccatccaaacacactcttagaga 36456091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 55266903 - 55266936
Alignment:
Q  39 cctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||||||||||||||||||||||    
T  55266903 cctcaaaacattcatccatccaaacacactctaa 55266936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 14982372 - 14982420
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| |||||||||||||||| ||||  |||||||||||||||||    
T  14982372 tcaaagtagttgaattccctcaaaagattcccccatccaaacacactct 14982420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 4441421 - 4441468
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactc 69  Q
    |||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  4441421 tcaaagtagttgaatttcctcaaaacattcccccatccaaacacactc 4441468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 29091206 - 29091175
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  29091206 acatcaaagtatttgaattccctcaaaacatt 29091175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 31742888 - 31742923
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31742888 attccctcaaaacattcctccatccaaacacactct 31742923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 40338259 - 40338309
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||| |||||||||||   |||||||||||| |||||    
T  40338259 tcaaagtatttgaattccatcaaaacattccctcatccaaacacagtctaa 40338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 52295052 - 52295098
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    ||||| ||||||||||||||| ||||||||  |||||||||||||||    
T  52295052 tcaaaatatttgaattccctcgaaacattcccccatccaaacacact 52295098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 857363 - 857404
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    ||||||||||||||||   |||||||||||||||||||||||    
T  857363 attccctcaaaacatttccccatccaaacacactctaagaga 857404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 31473884 - 31473847
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  31473884 attccctcaaaacattcccccatccaaacacactctaa 31473847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 36455942 - 36455905
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  36455942 attccctcaaaacattcccccatccaaacacactctaa 36455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 40548226 - 40548275
Alignment:
Q  23 caaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||| ||||||||||||    ||||||||||||||||||    
T  40548226 caaagtatttgaatttcctcaaaacattttctcatccaaacacactctaa 40548275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 49111436 - 49111473
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  49111436 attccctcaaaacattcccccatccaaacacactctaa 49111473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 1539707 - 1539679
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  1539707 tcaaagtatttgaattccctcaaaacatt 1539679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 17727131 - 17727091
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaa 62  Q
    ||||||||||||||||||| ||||||||||  |||||||||    
T  17727131 tcaaagtatttgaattcccacaaaacattcccccatccaaa 17727091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 46243108 - 46243148
Alignment:
Q  28 tatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    ||||||||||| ||||||||||||  |||||||||||||||    
T  46243108 tatttgaattctctcaaaacattcccccatccaaacacact 46243148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 54761567 - 54761618
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54761567 acatcaaagtatttgaattccctcaaaacattcctccatccaaacacactct 54761618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 47714333 - 47714286
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactcta 71  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  47714333 aaagtatttgaattccctcaaaacattcatccatccaagcacactcta 47714286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 46429460 - 46429409
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  46429460 aaagtagttgaattccctcaaaacattcccccatccaaacacactctaagag 46429409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 332040 - 331991
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  332040 tcaaagtagttgaattccctcaaaacattc-tccatccaaacacactctaa 331991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 332070 - 332116
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  332070 aaagtagttgaattccctcaaaacattcttccatccaaacacactct 332116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 47284208 - 47284260
Alignment:
Q  21 atcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||||||||||| ||||   |||||||||||||||||||    
T  47284208 atcaaagtatttgaattccctcaaaatattccctcatccaaacacactctaag 47284260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2104803 - 2104752
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||||||||||||| ||||||||  | |||||||||||||||    
T  2104803 acatcaaagtatttgaattccctcgaaacattcccctatccaaacacactct 2104752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 25655363 - 25655312
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||| ||||||||||||||||||||   ||||||||||||||||||||    
T  25655363 tcaaagtagttgaattccctcaaaacatttccccatccaaacacactctaag 25655312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 38506882 - 38506929
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactc 69  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||    
T  38506882 tcaaattatttgaattccctcaaaacattcctctatccaaacacactc 38506929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 27485520 - 27485474
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||    
T  27485520 tcaaagtagttgaattccctcaaaacattcccccatccaaacacact 27485474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 48947640 - 48947602
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  48947640 attccctcaaaacattcttccatccaaacacactctaag 48947602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 55460403 - 55460358
Alignment:
Q  25 aagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||    
T  55460403 aagtatttgaattccctcaaaacattcctacatccaaacacgctct 55460358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 44692946 - 44692981
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44692946 attccctcaaaacattcctccatccaaacacactct 44692981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 9007463 - 9007509
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||    
T  9007463 aaagtatttgaattcgttcaaaacattcccccatccaaacacactct 9007509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 26547091 - 26547049
Alignment:
Q  28 tatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||| |||||| |||| ||||||||||||||||||    
T  26547091 tatttgaattccttcaaaatattcctccatccaaacacactct 26547049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 36398026 - 36398064
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  36398026 attccctcaaaacattcccccatccaaacacactctaag 36398064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 47767467 - 47767429
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  47767467 attccctcaaaacattcccccatccaaacacactctaag 47767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 27251958 - 27251909
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||| ||||||||||| |||||||||  ||||||||||||| ||||||    
T  27251958 aaagtagttgaattcccttaaaacattcccccatccaaacacattctaag 27251909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 44692856 - 44692819
Alignment:
Q  36 ttccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  44692856 ttccctcaaaacattcccccatccaaacacactctaag 44692819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 46672840 - 46672877
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  46672840 attccctcaaaacattcccccatccaaacacactctaa 46672877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 21307538 - 21307566
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  21307538 tcaaagtatttgaattccctcaaaacatt 21307566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 25655392 - 25655444
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    |||||| ||||||||| ||||||||||   ||||||||||||||||| |||||    
T  25655392 aaagtagttgaattccgtcaaaacatttccccatccaaacacactcttagaga 25655444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 30444950 - 30445003
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  30444950 tcaaagtatttgaattccctcaaaacattcctccatccaaacacactcttagag 30445003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 7202913 - 7202865
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7202913 tcaaagtagttgaattccctcaaaacattcatccatccaaacacactct 7202865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 34008847 - 34008795
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaaga 74  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  34008847 tcaaagtatttgaattccctcaaaacattcccccatccaaacacactctaaga 34008795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 7202923 - 7202974
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  7202923 aaagtagttgaattccctcaaaacattcctccatccaaacacactctaagag 7202974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 29611436 - 29611385
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  29611436 tcaaagtatttgaattccctcaaaacattcccccatccaaacacactctaag 29611385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 42739997 - 42739949
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  42739997 tcaaagtagttgaattccctcaaaacattcctccatccaaacacactct 42739949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 28324710 - 28324751
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  28324710 attccctcaaaacattcctccatccaaacacactctaagaga 28324751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 40046839 - 40046804
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  40046839 attccctcaaaacattcatccatccaaacacactct 40046804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26520456 - 26520501
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacac 67  Q
    ||||||||||||||||||||||||||||||   |||||||||||||    
T  26520456 tcaaagtatttgaattccctcaaaacattccctcatccaaacacac 26520501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 33902702 - 33902665
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33902702 attccctcaaaacattcctccatccaaacacactctaa 33902665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 44889389 - 44889352
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44889389 attccctcaaaacattcctccatccaaacacactctaa 44889352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 8409944 - 8409984
Alignment:
Q  32 tgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  8409944 tgaattcccttaaaacattcctccatccaaacacactctaa 8409984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 3853651 - 3853612
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  3853651 attccctcaaaacattcccccatccaaacacactctaaga 3853612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 3858109 - 3858070
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  3858109 attccctcaaaacattcccccatccaaacacactctaaga 3858070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 29257399 - 29257438
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  29257399 attccctcaaaacattcccccatccaaacacactctaaga 29257438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 36103136 - 36103101
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||||||||||||||||||    
T  36103136 attccctcaaaacattcctccatccaaacacactct 36103101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 42711352 - 42711301
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||| ||||||| ||||||||||||   ||||||||||||||||||||    
T  42711352 tcaaagtagttgaatttcctcaaaacatttccccatccaaacacactctaag 42711301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 44889423 - 44889392
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  44889423 acatcaaagtatttgaattccctcaaaacatt 44889392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 17110993 - 17111031
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  17110993 attccctcaaaacatttctccatccaaacacactctaag 17111031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 515580 - 515617
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  515580 attccttcaaaacattcctccatccaaacacactctaa 515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 32626055 - 32626006
Alignment:
Q  24 aaagtatttgaattccctcaaaacatt-catccatccaaacacactctaa 72  Q
    |||||| ||||||||||||||||||||  || ||||||||||||||||||    
T  32626055 aaagtagttgaattccctcaaaacattatattcatccaaacacactctaa 32626006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 8049320 - 8049292
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  8049320 tcaaagtatttgaattccctcaaaacatt 8049292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 14800015 - 14799979
Alignment:
Q  34 aattccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||||  |||||||||||||||||    
T  14800015 aattccctcaaaacattcccccatccaaacacactct 14799979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 30435346 - 30435386
Alignment:
Q  31 ttgaattccctcaaaacattcatccatccaaacacactcta 71  Q
    ||||||||||||||||||||   ||||||||||||||||||    
T  30435346 ttgaattccctcaaaacatttccccatccaaacacactcta 30435386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 35979052 - 35979084
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacac 67  Q
    ||||||||||||||||| |||||||||||||||    
T  35979052 attccctcaaaacattcctccatccaaacacac 35979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 13814984 - 13815040
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  13814984 acatcaaagtatttgaattccctcaaaacattcccctatccaaacacactctaagag 13815040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 32650639 - 32650587
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  32650639 tcaaagtatttgaattccctcaaaacattcctccatcgaaacacactctaaga 32650587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30587893 - 30587943
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactc 69  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  30587893 acattaaagtatttgaattccctcaaaacattcccccatccaaacacactc 30587943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 40854033 - 40853984
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  40854033 aaagtagttgaattccctcaaaacattcccccatccaaacacactctaag 40853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 6498789 - 6498829
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagag 75  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  6498789 attccctcaaaacattcctccatccaaacacactctaagag 6498829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 29065854 - 29065819
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  29065854 attccctcaaaacattcatccatccaaacacactct 29065819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 14790179 - 14790134
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||    
T  14790179 tcaaagtatttgaattccctcaaaacattc-cccatccaaacacact 14790134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 19865547 - 19865601
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    |||||||||||||||| |||||||||||||   |||||||||||||||| |||||    
T  19865547 tcaaagtatttgaatttcctcaaaacattccctcatccaaacacactctcagaga 19865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 40667406 - 40667356
Alignment:
Q  23 caaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  40667406 caaagtatttaaattccctcaaaacattttcccatccaaacacactctaag 40667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 23548635 - 23548672
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23548635 attccctcaaaacattcctccatccaaacacactctaa 23548672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 28539192 - 28539232
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  28539192 attccctcaaaacattcccccatccaaacacactctaagag 28539232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 6498755 - 6498786
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  6498755 acatcaaagtatttgaattccctcaaaacatt 6498786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 31913275 - 31913236
Alignment:
Q  31 ttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  31913275 ttgaattccctcaaaacattcccccatccaaacacactct 31913236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 45984406 - 45984359
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactc 69  Q
    |||||||||||||||||||| ||||||||  | |||||||||||||||    
T  45984406 tcaaagtatttgaattcccttaaaacattttttcatccaaacacactc 45984359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 45988766 - 45988719
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactc 69  Q
    |||||||||||||||||||| ||||||||  | |||||||||||||||    
T  45988766 tcaaagtatttgaattcccttaaaacattttttcatccaaacacactc 45988719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 9784955 - 9784989
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactc 69  Q
    ||||||||||||||||| |||||||||||||||||    
T  9784955 attccctcaaaacattcctccatccaaacacactc 9784989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 30080796 - 30080842
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||| |||| |||||||||||||  |||||||||||||||||    
T  30080796 aaagtatttaaatttcctcaaaacattcccccatccaaacacactct 30080842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 34398973 - 34399011
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  34398973 attccctcaaaacattcccccatccaaacacactctaag 34399011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 26162161 - 26162198
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  26162161 attccctcaaaacattcccccatccaaacacactctaa 26162198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 35455839 - 35455802
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  35455839 attccctcaaaacattcccccatccaaacacactctaa 35455802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 2057520 - 2057560
Alignment:
Q  36 ttccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  2057520 ttccctcaaaatattcccccatccaaacacactctaagaga 2057560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 5644712 - 5644672
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagag 75  Q
    ||||||||||||||||| ||||| |||||||||||| ||||    
T  5644712 attccctcaaaacattcctccattcaaacacactcttagag 5644672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 14603286 - 14603326
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||  ||||||||||||||||| ||||    
T  14603286 attccctcaaaacattcccccatccaaacacactcttagag 14603326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 25189219 - 25189247
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  25189219 tcaaagtatttgaattccctcaaaacatt 25189247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 43791156 - 43791128
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  43791156 tcaaagtatttgaattccctcaaaacatt 43791128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15270858 - 15270906
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15270858 tcaaagtatttgaattccctcaaaacattcctccatccaaacacactct 15270906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 33146239 - 33146187
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaaga 74  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33146239 tcaaagtatttgaattccctcaaaacattcccccatccaaacacactctaaga 33146187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 22305160 - 22305106
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||| |||||    
T  22305160 tcaaagtagttgaattccctcaaaacattcccccatccaaacacactcttagaga 22305106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 33146103 - 33146057
Alignment:
Q  28 tatttgaattccctcaaaacattcatccatccaaacacactctaaga 74  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  33146103 tatttgaattccctcaaaacattcccccatccaaacacactctaaga 33146057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 34105137 - 34105087
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  34105137 tcaaagtatttgaattttctcaaaacattcctccatccaaacacactctaa 34105087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 34982309 - 34982351
Alignment:
Q  31 ttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  34982309 ttgaattccctcaaaacattcctccatccaaacacactctaag 34982351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 2550376 - 2550328
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  2550376 tcaaagtagttgaattccctcaaaacattcccccatccaaacacactct 2550328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 22302584 - 22302536
Alignment:
Q  25 aagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  22302584 aagtatttgaattccctcaaaacattaccccatccaaacacactctaag 22302536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 40643884 - 40643833
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||| ||||    
T  40643884 tcaaagtagttgaattccctcaaaacatttctccatccaaacacactataag 40643833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 17542365 - 17542405
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaa 62  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  17542365 tcaaagtatttgaattccctcaaaacattctcccatccaaa 17542405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 12064472 - 12064519
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactc 69  Q
    ||||||||||| ||||||||||||||||||  ||||| ||||||||||    
T  12064472 tcaaagtatttaaattccctcaaaacattcccccatcaaaacacactc 12064519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 15373995 - 15373956
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  15373995 attccctcaaaaaattcttccatccaaacacactctaaga 15373956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 28490058 - 28490008
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  28490058 tcaaagtatttgaattccctcaaaaca-tcccccatccaaacacactttaag 28490008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 22303905 - 22303943
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  22303905 attccctcaaaacattcccccatccaaacacactctaag 22303943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 19533942 - 19533975
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacact 68  Q
    ||||||||||||||||| ||||||||||||||||    
T  19533942 attccctcaaaacattcctccatccaaacacact 19533975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 20523168 - 20523131
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  20523168 attccctcaaaacattctcccatccaaacacactctaa 20523131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 22766987 - 22766950
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22766987 attccctcaaaacattcccccatccaaacacactctaa 22766950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 28489529 - 28489485
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacaca 66  Q
    ||||||||||||||||| ||||||| ||||  |||||||||||||    
T  28489529 tcaaagtatttgaattctctcaaaatattcccccatccaaacaca 28489485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 37241606 - 37241634
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  37241606 tcaaagtatttgaattccctcaaaacatt 37241634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 37722898 - 37722926
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  37722898 tcaaagtatttgaattccctcaaaacatt 37722926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 109100 - 109047
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  109100 acatcaaagtatttaaattccctcaaaacattcccccatccaaacacactctaa 109047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 20935775 - 20935723
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  20935775 acatcaaagtatttgaattccctcaaaacattc-cccatccaaacacactctaa 20935723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2924823 - 2924775
Alignment:
Q  25 aagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  2924823 aagtatttgaattccctcaaaacattcttctatccaaacacactctaag 2924775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 11684683 - 11684731
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  11684683 tcaaagtagttgaattccctcaaaacattcctccatccaaacacactct 11684731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 8736448 - 8736499
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  8736448 tcaaagtatttgaattccctcaaaacattccctcatccaaacacactctaag 8736499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 14537294 - 14537343
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  14537294 aaagtagttgaattccctcaaaacattcccccatccaaacacactctaag 14537343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 21504516 - 21504463
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||||||||||||    
T  21504516 tcaaaatatttgaattccctcaaaacattccccgatccaaacacactctaagag 21504463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 41585697 - 41585750
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  41585697 tcaaagtatttgaattccctcaaaacatttcaccatccaaacacactcttagag 41585750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 11607287 - 11607241
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    |||||||||||||||||||||||||||||   |||||||||||||||    
T  11607287 tcaaagtatttgaattccctcaaaacattaccccatccaaacacact 11607241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 11716443 - 11716405
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  11716443 attccctcaaaacattcttccatccaaacacactctaag 11716405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 11824746 - 11824704
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaaca 64  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  11824746 tcaaagtagttgaattccctcaaaacattcctccatccaaaca 11824704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 14365823 - 14365861
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14365823 attccctcaaaacattcctccatccaaacacactctaag 14365861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 1583847 - 1583888
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  1583847 attccctcaaaacattcccccatccaaacacactctaagaga 1583888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 7684509 - 7684468
Alignment:
Q  23 caaagtatttgaattccctcaaaacattcatccatccaaaca 64  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  7684509 caaagtatttgaattccctccaaacattcttccatccaaaca 7684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 11824775 - 11824824
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||| |||||||||||||||||||||  ||||||||||||||| ||||    
T  11824775 aaagtagttgaattccctcaaaacattcccccatccaaacacactttaag 11824824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 44205662 - 44205711
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    |||| |||||||||||||||||||||||||||   |||||||||||||||    
T  44205662 acataaaagtatttgaattccctcaaaacatttccccatccaaacacact 44205711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 3345809 - 3345765
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    |||||| |||||||||||||||||||||  |||||||||||||||    
T  3345809 aaagtagttgaattccctcaaaacattcccccatccaaacacact 3345765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 41461639 - 41461679
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  41461639 attccctcaaaacattcccccatccaaacacactctaagag 41461679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19231289 - 19231336
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacaca 66  Q
    |||||||  ||||||||||||||||||||||||  |||||||||||||    
T  19231289 acatcaacttatttgaattccctcaaaacattcccccatccaaacaca 19231336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 28740665 - 28740634
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  28740665 acatcaaagtatttgaattccctcaaaacatt 28740634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 11595385 - 11595339
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    ||||| |||||||||||||||||||||||   |||||||||||||||    
T  11595385 tcaaaatatttgaattccctcaaaacattaccccatccaaacacact 11595339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 3092317 - 3092276
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    ||||||||||||||||| |||||||||| ||||||| |||||    
T  3092317 attccctcaaaacattcctccatccaaatacactcttagaga 3092276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 11532260 - 11532288
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  11532260 tcaaagtatttgaattccctcaaaacatt 11532288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 32839655 - 32839683
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  32839655 tcaaagtatttgaattccctcaaaacatt 32839683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 41822552 - 41822596
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  41822552 aaagtatttgaattccctcaaaacattcattcatccaaacacact 41822596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 45565487 - 45565535
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  45565487 tcaaagtagttgaattccctcaaaacattcttccatccaaacacactct 45565535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 32572988 - 32572937
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  32572988 tcaaagtagttgaattccctcaaaacattcccccatccaaacacactctaag 32572937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 13181654 - 13181608
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacact 68  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  13181654 tcaaagtatttgaattccctcaaaagattcttccatccaaacacact 13181608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 32128095 - 32128046
Alignment:
Q  23 caaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  32128095 caaagtatttgaattccctcaaaacattcccccatctaaacacactctaa 32128046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 37214914 - 37214962
Alignment:
Q  25 aagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  37214914 aagtagttgaattccctcaaaacattctcccatccaaacacactctaag 37214962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 48953629 - 48953581
Alignment:
Q  28 tatttgaattccctcaaaacattcatccatccaaacacactctaagaga 76  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||    
T  48953629 tatttgaattccttcaaaacattcccccatccaaacacactctaagaga 48953581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 23536162 - 23536213
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||| |||||||||||||||||||||  ||||||||||||| ||||||||    
T  23536162 aaagtagttgaattccctcaaaacattcccccatccaaacacattctaagag 23536213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 15245506 - 15245460
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||| |||||||||||||||||||||  |||||||||||||||||    
T  15245506 aaagtagttgaattccctcaaaacattcccccatccaaacacactct 15245460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 50471814 - 50471768
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||    
T  50471814 aaagtatttgaattccctcaaaactttcccccatccaaacacactct 50471768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 5474465 - 5474417
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| || ||||||||||||||||||  |||||||||||||||||    
T  5474465 tcaaagtaattaaattccctcaaaacattcccccatccaaacacactct 5474417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 37447363 - 37447419
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||||| ||||||||||||  | |||||||||| |||| ||||    
T  37447363 acatcaaagtatttgaattctctcaaaacattcccctatccaaacacgctcttagag 37447419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 40264096 - 40264048
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| |||||||||||||||||||||  | |||||||||||||||    
T  40264096 tcaaagtagttgaattccctcaaaacattcccctatccaaacacactct 40264048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 41823167 - 41823215
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||| ||||||||||||| |||||||||||  |||||||||||||||||    
T  41823167 tcaaggtatttgaattccttcaaaacattcccccatccaaacacactct 41823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 15034694 - 15034659
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15034694 attccctcaaaacattcctccatccaaacacactct 15034659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 24273258 - 24273297
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaaga 74  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  24273258 attccctcaaaacattcccccatccaaacacactctaaga 24273297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 26501083 - 26501114
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  26501083 acatcaaagtatttgaattccctcaaaacatt 26501114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 26501117 - 26501152
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26501117 attccctcaaaacattcctccatccaaacacactct 26501152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 34007406 - 34007355
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||| |||||||||||||||| |||   ||||||||||||||||||||    
T  34007406 tcaaagtagttgaattccctcaaaatatttccccatccaaacacactctaag 34007355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 41822704 - 41822751
Alignment:
Q  22 tcaaagtatttgaa-ttccctcaaaacattcatccatccaaacacact 68  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  41822704 tcaaagtatttgaaattccctcaaaacattcattcattcaaacacact 41822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 44571267 - 44571225
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacac 65  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  44571267 tcaaagtatttgaattccctcaaaacattc-cccatccaaacac 44571225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 15034783 - 15034821
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  15034783 attccctcaaaacattcccccatccaaacacactctaag 15034821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 30190260 - 30190298
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  30190260 attccctcaaaacattcccccatccaaacacactctaag 30190298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 17502275 - 17502323
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||| |||||||||||||||||||||  | ||| |||||||||||||    
T  17502275 aaagtagttgaattccctcaaaacattccccaatcaaaacacactctaa 17502323  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 34007428 - 34007476
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| |||||||||||||||| |||   |||||||||||||||||    
T  34007428 tcaaagtagttgaattccctcaaaatatttccccatccaaacacactct 34007476  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 44410346 - 44410306
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaagag 75  Q
    |||||||||||||||||  ||||||||| ||||||||||||    
T  44410346 attccctcaaaacattctcccatccaaatacactctaagag 44410306  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 52135638 - 52135674
Alignment:
Q  28 tatttgaattccctcaaaacattcatccatccaaaca 64  Q
    |||||||||||||||||||||||  ||||||||||||    
T  52135638 tatttgaattccctcaaaacatttctccatccaaaca 52135674  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 1195399 - 1195351
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||    
T  1195399 tcaaagtatttgaaatccctcaaaacattcccccatccaaacacactct 1195351  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 8475225 - 8475179
Alignment:
Q  24 aaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||||||||||||||||||||||   |||||||||||||||||    
T  8475225 aaagtatttgaattccctcaaaacatttccccatccaaacacactct 8475179  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 34245018 - 34245056
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  34245018 attccctcaaaacattcctccatccaaacacactctaag 34245056  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 28918200 - 28918165
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28918200 attccctcaaaacattcctccatccaaacacactct 28918165  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 29889438 - 29889469
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  29889438 acatcaaagtatttgaattccctcaaaacatt 29889469  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 34244984 - 34245015
Alignment:
Q  19 acatcaaagtatttgaattccctcaaaacatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  34244984 acatcaaagtatttgaattccctcaaaacatt 34245015  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 1368512 - 1368474
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  1368512 attctctcaaaacattcctccatccaaacacactctaag 1368474  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 9285682 - 9285644
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  9285682 attccctcaaaacattcccccatccaaacacactctaag 9285644  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 29889472 - 29889510
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaag 73  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  29889472 attccatcaaaacattcctccatccaaacacactctaag 29889510  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 33733467 - 33733430
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  33733467 attccctcaaaacattcccccatccaaacacactctaa 33733430  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9285740 - 9285788
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactct 70  Q
    |||||||| |||||||||||||||||||||   |||| |||||||||||    
T  9285740 tcaaagtagttgaattccctcaaaacattccctcatctaaacacactct 9285788  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 31412968 - 31412940
Alignment:
Q  21 atcaaagtatttgaattccctcaaaacat 49  Q
    |||||||||||||||||||||||||||||    
T  31412968 atcaaagtatttgaattccctcaaaacat 31412940  T

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Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 17592 - 17643
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacattcatccatccaaacacactctaag 73  Q
    |||||| | |||||||||||||||||||||  ||||||||||||||||||||    
T  17592 tcaaaggagttgaattccctcaaaacattcccccatccaaacacactctaag 17643  T

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Target: scaffold0301 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 7186 - 7153
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacact 68  Q
    ||||||||||||||||| ||||||||||||||||    
T  7186 attccctcaaaacattcctccatccaaacacact 7153  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9593 - 9642
Alignment:
Q  22 tcaaagtatttgaattccctc-aaaacattcatccatccaaacacactct 70  Q
    ||||||||||||||||| ||| ||||||||| |||||| |||||||||||    
T  9593 tcaaagtatttgaattctctcaaaaacattcctccatctaaacacactct 9642  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 82978 - 82945
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacact 68  Q
    |||||||||||||||||| |||||||||||||||    
T  82978 attccctcaaaacattcacccatccaaacacact 82945  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 42032 - 41995
Alignment:
Q  35 attccctcaaaacattcatccatccaaacacactctaa 72  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  42032 attccctcaaaacattcctccattcaaacacactctaa 41995  T

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Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 4141 - 4113
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  4141 tcaaagtatttgaattccctcaaaacatt 4113  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 10952 - 10924
Alignment:
Q  22 tcaaagtatttgaattccctcaaaacatt 50  Q
    |||||||||||||||||||||||||||||    
T  10952 tcaaagtatttgaattccctcaaaacatt 10924  T

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