View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6903_low_16 (Length: 247)

Name: NF6903_low_16
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6903_low_16
NF6903_low_16
[»] chr1 (5 HSPs)
chr1 (17-224)||(3376177-3376384)
chr1 (15-224)||(43782978-43783187)
chr1 (22-209)||(45152426-45152614)
chr1 (22-209)||(48998859-48999047)
chr1 (22-170)||(33297417-33297565)
[»] chr7 (5 HSPs)
chr7 (15-224)||(12627159-12627365)
chr7 (34-164)||(1327136-1327267)
chr7 (109-185)||(10587496-10587572)
chr7 (111-222)||(40792146-40792256)
chr7 (22-170)||(38457273-38457421)
[»] chr2 (5 HSPs)
chr2 (17-209)||(31117170-31117362)
chr2 (127-222)||(11806065-11806160)
chr2 (22-170)||(28035436-28035584)
chr2 (135-222)||(37938629-37938716)
chr2 (138-222)||(15422546-15422630)
[»] scaffold0018 (1 HSPs)
scaffold0018 (56-224)||(180643-180811)
[»] chr3 (9 HSPs)
chr3 (54-224)||(19198878-19199048)
chr3 (27-224)||(1596522-1596721)
chr3 (139-224)||(12073822-12073907)
chr3 (30-209)||(34438068-34438249)
chr3 (110-184)||(11426066-11426140)
chr3 (22-170)||(6777611-6777759)
chr3 (27-78)||(22008963-22009014)
chr3 (27-78)||(22185138-22185189)
chr3 (134-187)||(7630953-7631006)
[»] scaffold0010 (1 HSPs)
scaffold0010 (27-224)||(32529-32728)
[»] chr5 (6 HSPs)
chr5 (128-222)||(20943472-20943566)
chr5 (22-224)||(2742730-2742934)
chr5 (27-120)||(26648526-26648619)
chr5 (27-120)||(26920111-26920204)
chr5 (135-222)||(24209516-24209603)
chr5 (137-185)||(32554479-32554527)
[»] chr8 (3 HSPs)
chr8 (22-224)||(37228006-37228210)
chr8 (134-209)||(2640732-2640807)
chr8 (110-209)||(15910076-15910177)
[»] chr4 (6 HSPs)
chr4 (22-224)||(32308049-32308253)
chr4 (22-209)||(39465099-39465287)
chr4 (22-218)||(3680564-3680762)
chr4 (22-224)||(25147102-25147305)
chr4 (110-177)||(38651523-38651590)
chr4 (129-209)||(42705525-42705607)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-170)||(274191-274339)
[»] scaffold0251 (1 HSPs)
scaffold0251 (22-218)||(17264-17462)
[»] chr6 (2 HSPs)
chr6 (126-209)||(2029468-2029553)
chr6 (22-224)||(35014105-35014309)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 3376177 - 3376384
Alignment:
Q  17 catcactgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcgg 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3376177 catcactgtggtgtccaggatcagaaaagccactgggaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcgg 3376276  T
Q  117 aatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  3376277 aatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacatgtattatacaaacaactatacattaacgatc 3376376  T
Q  217 cactaagt 224  Q
    ||||||||    
T  3376377 cactaagt 3376384  T

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Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 43782978 - 43783187
Alignment:
Q  15 gacatcactgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctc 114  Q
    |||||| |||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||| |||||    
T  43782978 gacatctctgtagtgtccaggatcaaaaaagcccctgggaggtttccattgatccacaagcggggcaagagcaggctcgtaatcatcattatgaatcctc 43783077  T
Q  115 ggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaaga 214  Q
    |||||||||||  ||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||| ||| | ||    
T  43783078 ggaatgaggttcgtgaagtgcgccaaagcccatccctgcaaacacaaagaaacaaatttatatcagcacaagtattatacaaacaattataaatttacga 43783177  T
Q  215 tccactaagt 224  Q
    |||| |||||    
T  43783178 tccaataagt 43783187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 45152614 - 45152426
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| |||||| ||||||| ||| || |||| |||||||||||||  ||||||||||| ||||||| ||||| |||||||||||||| |||||| || ||    
T  45152614 ctgtagtgtccgggatcagtaaaacctctggtaggtttccattgactcacaagcggggtaagagcagggtcgtactcatcattatgaatcctcgaaagga 45152515  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaa-acacaaagaaacaaaattatattagcacaagtattatataaacaactatacatt 209  Q
    || | |||||| |||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||    
T  45152514 ggatcctgaagtgcgcaaaaacacatccctgcaacacacaaagaaacaaatttatatcagcacaagtattatacaaacaactatacatt 45152426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 48999047 - 48998859
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||| ||| || | |||||||||||||  ||||||||||| || |||| ||||| | ||||||| || | ||||||||||||    
T  48999047 ctgtagtgtccaggattagaaa-gcctcttgcaggtttccattgactcacaagcggggaaacagcagggtcgtaatcatcatcatcaatcctcggaatga 48998949  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacatt 209  Q
     |||   |||| ||||||||  |||||| |||||||||||||||||||  | |||||| | | |||| |||||| ||||||||| |||||    
T  48998948 tgttcgagaagtgcgccaaagtccatccttgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatt 48998859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 33297417 - 33297565
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||| ||| ||||||||| || | |||||||||||||  ||||||||||| || | |||||||| |  |||||| || | ||||| ||||||    
T  33297417 ctgtagtgtccaagattagaaaagccccttggaggtttccattgactcacaagcggggaaacaacaaggtcgtaggcatcatgatcaatcctcagaatga 33297516  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaa 170  Q
     |||   |||  ||||||||  |||||||||||||||||||||||||||    
T  33297517 tgttcgagaattgcgccaaagtccatccctgcaaacacaaagaaacaaa 33297565  T

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Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 12627365 - 12627159
Alignment:
Q  15 gacatcactgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctc 114  Q
    |||||| |||| ||||| |||||||||||| || |||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||  |||||||    
T  12627365 gacatctctgtagtgtctaggatcagaaaatcccctgggaggtttcgattgatccacaagcggggcaagagcagggtcgtactcatcattacaattcctc 12627266  T
Q  115 ggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaaga 214  Q
      ||||||||| |||||| |||| |||||||||||||||||||||||||||||||    |||| | ||||||||||||| ||||||||||||||| | ||    
T  12627265 ataatgaggttcctgaagtgcgcaaaaacccatccctgcaaacacaaagaaacaa---catatcaacacaagtattatacaaacaactatacatttacga 12627169  T
Q  215 tccactaagt 224  Q
    |||| |||||    
T  12627168 tccaataagt 12627159  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 1327136 - 1327267
Alignment:
Q  34 ggatcagaaaagccactggaaggtttccattgatccacaagc-ggggcaagagcaaggtcgcactcatcattatgattcctcggaatgaggtttctgaag 132  Q
    |||||||||||||| |||  ||||||||||||||||| |||| |||||||||| | ||| | ||||||||||  ||||||| ||||||||||| ||||||    
T  1327136 ggatcagaaaagcccctgataggtttccattgatccataagcaggggcaagagtagggttgtactcatcattgcgattccttggaatgaggttcctgaag 1327235  T
Q  133 cgcgccaaaacccatccctgcaaacacaaaga 164  Q
     |||||||| | ||||| ||||||||||||||    
T  1327236 tgcgccaaagctcatccttgcaaacacaaaga 1327267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 10587572 - 10587496
Alignment:
Q  109 ttcctcggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaa 185  Q
    ||||||| |||||| |||| |||| || |||||||||||| ||||||||||||||| ||| ||| ||||||||||||    
T  10587572 ttcctcgaaatgagctttcggaagtgctccaaaacccatcactgcaaacacaaagagacacaataatattagcacaa 10587496  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 40792146 - 40792256
Alignment:
Q  111 cctcggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacatta 210  Q
    |||||||||||  ||  |||||||||||||||||||||||| |||||||| ||| |  ||||||||| ||||||| ||| ||| |||||| ||||||||     
T  40792146 cctcggaatgatcttcttgaagcgcgccaaaacccatccctacaaacacagagaga-taaattatatcagcacaaatatcatacaaacaaatatacattt 40792244  T
Q  211 aagatccactaa 222  Q
    | ||| ||||||    
T  40792245 atgattcactaa 40792256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 38457421 - 38457273
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | ||||||| |||||  |||||||| || || | || ||||| |  |||||| || | ||||| ||||||    
T  38457421 ctgtagtgtccaggattagaaaagccccttggaggtttctattgactcacaagcgaggaaacaacagggtcgtaagcatcatcatcaatcctcagaatga 38457322  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaa 170  Q
     |||   |||| | ||||||  |||| ||||||||||||||||||||||    
T  38457321 tgttcgagaagtgagccaaagtccatacctgcaaacacaaagaaacaaa 38457273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 31117170 - 31117362
Alignment:
Q  17 catcactgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcgg 116  Q
    |||| |||| ||||||||||| ||||||||| |||| |||||||||||||  ||||||||||| || |  | ||||| | ||||||| || | |||||||    
T  31117170 catctctgtagtgtccaggattagaaaagcccctgggaggtttccattgactcacaagcggggaaacaatagggtcgtagtcatcatcatcaatcctcgg 31117269  T
Q  117 aatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacatt 209  Q
    ||||| |||  ||||| ||| ||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||    
T  31117270 aatgatgttcgtgaagtgcgtcaaagtccatccctgcaaacacaaagaaacaaatttatatcagcacaagtattatacaaacaactatacatt 31117362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 11806065 - 11806160
Alignment:
Q  127 ctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaa 222  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||| |||||| |||| |||||| |||  |||||||||||||| | ||| ||||||    
T  11806065 ctgaagtgcgcaaaaacccatctctgcaaacacaaagagacaaatttatatcagcataagtatcatacgaacaactatacatttacgattcactaa 11806160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 28035584 - 28035436
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | ||||| |||||||  ||||||||||| || | || ||||| |  |||||| || | ||||||||||||    
T  28035584 ctgtagtgtccaggattagaaaagccccttggaggttcccattgactcacaagcggggaaacaacagggtcgtaggcatcatcatcaatcctcggaatga 28035485  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaa 170  Q
     |||   ||||  | |||||  ||||||||| |||||||||||||||||    
T  28035484 tgttcgagaagttcaccaaagtccatccctgtaaacacaaagaaacaaa 28035436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 37938629 - 37938716
Alignment:
Q  135 cgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaa 222  Q
    ||||||||| |||| ||||||||||||||| ||||| |||||  |||||||||||  || |||||| ||||||||   ||||||||||    
T  37938629 cgccaaaacacatctctgcaaacacaaagagacaaatttataccagcacaagtatattacaaacaaatatacatttgtgatccactaa 37938716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 15422546 - 15422630
Alignment:
Q  138 caaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaa 222  Q
    |||||| ||||| |||||||||||||| ||||| |||||| ||   |||||| ||| |||||| |||||||| | || |||||||    
T  15422546 caaaactcatccttgcaaacacaaagagacaaatttatatcagggaaagtatcatacaaacaaatatacatttatgaaccactaa 15422630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 180643 - 180811
Alignment:
Q  56 gtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatgaggtttctgaagcgcgccaaaacccatccctgcaa 155  Q
    |||||||||||  |||||||||||||||||||  || | ||||||||||| || |||| |||| ||| || |||||| |||| ||||| |||||||||||    
T  180643 gtttccattgactcacaagcggggcaagagcagagttgtactcatcattacgaatcctgggaaggagattcctgaagtgcgcaaaaactcatccctgcaa 180742  T
Q  156 acacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaagt 224  Q
    ||| ||||||||||| |||||| |||| |||||||||| |||||| |||||||| | |||||| |||||    
T  180743 acagaaagaaacaaatttatatcagcagaagtattatacaaacaattatacatttacgatccaataagt 180811  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 19199048 - 19198878
Alignment:
Q  54 aggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatgaggtttctgaagcgcgccaaaacccatccctgc 153  Q
    |||||||||| ||  |||||||||||||||| || | ||| ||||||||||| || ||||   || |||||  |||||| | || ||||| |||||||||    
T  19199048 aggtttccatcgactcacaagcggggcaagaacatgttcgtactcatcattacgaatccttaaaaggaggtacctgaagtgggcaaaaacgcatccctgc 19198949  T
Q  154 aaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaagt 224  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||| || |||||    
T  19198948 aaacacaaagaaacaaatttatatcagcacaagtattatacaaacaactatacatttaagattcaataagt 19198878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 1596522 - 1596721
Alignment:
Q  27 gtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatgaggttt 126  Q
    |||||||| || ||||||||| |||| |||||||||||||  ||||| ||||| || | || ||| | | | ||||| || | | |||||||||| ||||    
T  1596522 gtgtccagaattagaaaagcccctgggaggtttccattgacgcacaaacggggaaataacagggttgtagtaatcatcatcaattctcggaatgatgttt 1596621  T
Q  127 ctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatccactaagt 224  Q
      |||||||||||||  |||| |||||||||||||||||||||  | |||||||||| |||| |||||| ||||||||| ||||| | |||||| |||||    
T  1596622 gagaagcgcgccaaagtccatgcctgcaaacacaaagaaacaaatatttatattagcgcaagaattatacaaacaactaaacatttacgatccaataagt 1596721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 12073907 - 12073822
Alignment:
Q  139 aaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaagt 224  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||| | |||||| |||||    
T  12073907 aaaacccatccctgtaaacacaaagaaacaaatttatatcagcacaaatattatacaaacaactatacatttacgatccaataagt 12073822  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 34438068 - 34438249
Alignment:
Q  30 tccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatgaggtttctg 129  Q
    |||||||| ||||||||| || | |||||||||||||  |||||| |||| || |||| ||||| |  |||||| || | |||||||||||| |||   |    
T  34438068 tccaggattagaaaagccccttggaggtttccattgactcacaagaggggaaacagcagggtcgtaggcatcatcatcaatcctcggaatgatgttcgag 34438167  T
Q  130 aagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacatt 209  Q
    ||| ||||||||  |||||| |||||||||||||||||||  | |||||| | | |||| |||||| ||||||||| |||||    
T  34438168 aagtgcgccaaagtccatccttgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatt 34438249  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 11426066 - 11426140
Alignment:
Q  110 tcctcggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcaca 184  Q
    ||||||||| ||| | ||||||| | || |||||||||||||||||||||||||| ||||| |||||||||||||    
T  11426066 tcctcggaacgagatgtctgaagtgagctaaaacccatccctgcaaacacaaagagacaaatttatattagcaca 11426140  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 6777759 - 6777611
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | |||||||||||||  |||||| |||| || || ||| ||  | ||||||| || | ||||| ||||||    
T  6777759 ctgtagtgtccaggattagaaaagccccttggaggtttccattgactcacaagtggggaaatagtaagatcatagtcatcatcatcaatcctcagaatga 6777660  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaa 170  Q
      ||    ||| ||||||||  |||||||||||||||||||||||||||    
T  6777659 tattcgaaaagtgcgccaaagtccatccctgcaaacacaaagaaacaaa 6777611  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 22009014 - 22008963
Alignment:
Q  27 gtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggg 78  Q
    |||||||| |||||||||||| |||| ||||||||||| | |||||||||||    
T  22009014 gtgtccagcatcagaaaagcccctgggaggtttccatttacccacaagcggg 22008963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 22185189 - 22185138
Alignment:
Q  27 gtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggg 78  Q
    |||||||| |||||||||||| |||| ||||||||||| | |||||||||||    
T  22185189 gtgtccagcatcagaaaagcccctgggaggtttccatttacccacaagcggg 22185138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 7631006 - 7630953
Alignment:
Q  134 gcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagt 187  Q
    |||||||||| ||||||| |||||||||||| ||| | |||||| |||||||||    
T  7631006 gcgccaaaactcatccctacaaacacaaagagacatatttatatcagcacaagt 7630953  T

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Target: scaffold0010 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 32529 - 32728
Alignment:
Q  27 gtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatgaggttt 126  Q
    ||||||||||| ||||||||| |||| |||||||||||||  | || |||||| || |  | ||||| | ||||||| || | |||||||||||| |||     
T  32529 gtgtccaggattagaaaagcccctgggaggtttccattgactcgcatgcggggaaacaatagggtcgtagtcatcatcatcaatcctcggaatgatgttc 32628  T
Q  127 ctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaa--ttatattagcacaagtattatataaacaactatacattaaagatccactaagt 224  Q
     ||||| ||||||||   ||||||| |||| |||||||||||||   |||||| ||||||||||||||| ||||||||| ||||| | |||||| |||||    
T  32629 gtgaagtgcgccaaagttcatccctacaaatacaaagaaacaaatatttatatcagcacaagtattatacaaacaactaaacatttatgatccaataagt 32728  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 20943566 - 20943472
Alignment:
Q  128 tgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaa 222  Q
    ||||| |||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||| ||| ||||||||||  ||| | ||||||||||    
T  20943566 tgaagtgcgccataacccatccctgcaaacacaaagagacaaatttatatcagcacaagtatcatacaaacaactatttatttatgatccactaa 20943472  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 2742934 - 2742730
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | |||||||||||||  ||||||||| | || |||| ||||| |  | |||| || | ||||||||||||    
T  2742934 ctgtagtgtccaggattagaaaagccccttggaggtttccattgaatcacaagcggagaaacagcagggtcgtaggcgtcatcatcaatcctcggaatga 2742835  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatccac 219  Q
     |||   |||| ||| ||||  ||||||||||||||| ||||||||||  | |||||| | | |||| |||||| |||||| || ||||| | ||||||     
T  2742834 tgttcgagaagtgcgtcaaagtccatccctgcaaacataaagaaacaaatatttatatcaccgcaagaattatacaaacaattaaacatttacgatccaa 2742735  T
Q  220 taagt 224  Q
    |||||    
T  2742734 taagt 2742730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 26648619 - 26648526
Alignment:
Q  27 gtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatg 120  Q
    ||||||||||| ||||||| | || | ||||||| ||| |  ||||| |||||||| |||| |||||||||||||||||| | |||||||||||    
T  26648619 gtgtccaggataagaaaaggctcttggaggtttcaattaactcacaaacggggcaatagcatggtcgcactcatcattatcaatcctcggaatg 26648526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 26920204 - 26920111
Alignment:
Q  27 gtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatg 120  Q
    ||||||||||| ||||||| | || | ||||||| ||| |  ||||| |||||||| |||| |||||||||||||||||| | |||||||||||    
T  26920204 gtgtccaggataagaaaaggctcttggaggtttcaattaactcacaaacggggcaatagcatggtcgcactcatcattatcaatcctcggaatg 26920111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 24209516 - 24209603
Alignment:
Q  135 cgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacattaaagatccactaa 222  Q
    ||||||||| ||||||| |||||||||||| ||||| |||||| | || |||||| ||| |||||| |||||||| | ||| ||||||    
T  24209516 cgccaaaactcatccctacaaacacaaagagacaaatttatatcaacataagtatcatacaaacaaatatacatttatgattcactaa 24209603  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 32554479 - 32554527
Alignment:
Q  137 ccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaa 185  Q
    ||||||||||||||| |||||||||| | ||| ||| ||||||||||||    
T  32554479 ccaaaacccatccctacaaacacaaatagacacaataatattagcacaa 32554527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 37228006 - 37228210
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||| | || | || ||| ||||||  ||||||||||| || |||| ||||| |  |||||| || | ||||| ||||||    
T  37228006 ctgtagtgtccaggattagaaaagtcccttggagtttttcattgactcacaagcggggaaacagcagggtcgtaggcatcatcatcaatcctctgaatga 37228105  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatccac 219  Q
     |||   |||| ||||||||  ||||||||||||||||||||||||||  | |||||| | |||||| |||||| ||||||||| ||||| | ||||||     
T  37228106 tgttcgagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccacaagaattatacaaacaactaaacatttacgatccaa 37228205  T
Q  220 taagt 224  Q
    |||||    
T  37228206 taagt 37228210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 2640807 - 2640732
Alignment:
Q  134 gcgccaaaacccatccctgcaaacacaaagaaacaaaattatattagcacaagtattatataaacaactatacatt 209  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| | || |||||| ||| |||||||||||||||    
T  2640807 gcgccaaaacccatccctgcaaacacaaagagacaaatttatatcatcataagtatcatacaaacaactatacatt 2640732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 15910076 - 15910177
Alignment:
Q  110 tcctcggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattag--cacaagtattatataaacaactataca 207  Q
    |||||| |||||| | ||||||| | |  ||||| ||| |||||||||||||||| ||||| |||||||||  ||||||||| ||| ||| |||||||||    
T  15910076 tcctcgaaatgagttgtctgaagtgagaaaaaactcattcctgcaaacacaaagagacaaatttatattagcacacaagtatcatacaaaaaactataca 15910175  T
Q  208 tt 209  Q
    ||    
T  15910176 tt 15910177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 32308049 - 32308253
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | |||||||| ||||  ||||||||||| || || | ||||| |  |||||| || | ||||| ||||||    
T  32308049 ctgtagtgtccaggattagaaaagccccttggaggtttcctttgactcacaagcggggaaacagtagggtcgtaggcatcatcatcaatcctcagaatga 32308148  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatccac 219  Q
     ||||| |||| ||||||||  | ||||||||||||||||||||||||  | |||||| | | |||| |||||| ||| ||||| ||||| | ||||||     
T  32308149 tgtttcagaagtgcgccaaagtctatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaataactaaacatttacgatccaa 32308248  T
Q  220 taagt 224  Q
    |||||    
T  32308249 taagt 32308253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 39465287 - 39465099
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || ||||||||||||| |  |||||| |||| || |||| ||||| |  |||||| || | |||||||||| |    
T  39465287 ctgtagtgtccaggattagaaaagccccttgaaggtttccattcactcacaagtggggaaacagcagggtcgtaggcatcatcatcaatcctcggaataa 39465188  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacaca-aagaaacaaaattatattagcacaagtattatataaacaactatacatt 209  Q
     |||   |||| ||||||||  ||||||||||||||||| || ||| | | |||||| | | |||| |||||| ||||||||| |||||    
T  39465187 tgttcgagaagtgcgccaaagtccatccctgcaaacacagaaaaaaaatatttatatcaccgcaagaattatacaaacaactaaacatt 39465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 3680762 - 3680564
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||| ||| |||||| || || |||||||||||||||  ||||||||||| || || | ||||| |  |||||| || | |||   ||||||    
T  3680762 ctgtagtgtccaagattagaaaatccccttgaaggtttccattgactcacaagcggggaaacagtagggtcgtaggcatcatcatcaatccctagaatga 3680663  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatcca 218  Q
     |||   |||| ||||||||  |||||| |||||||||||| ||||||  | |||||| | |||||| |||||| ||||||||| ||||| | ||||||    
T  3680662 tgttcgagaagtgcgccaaagtccatccttgcaaacacaaacaaacaaatatttatatcaccacaagaattatacaaacaactaaacatttatgatcca 3680564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 25147305 - 25147102
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | | |||||||||||  |||||| |||| || |||| ||||| |  |||||| || | ||||| ||||||    
T  25147305 ctgtagtgtccaggattagaaaagccccttggatgtttccattgactcacaagtggggaaacagcagggtcgtaggcatcatcatcaatcctc-gaatga 25147207  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatccac 219  Q
     |||   |||| ||||||||  |||| |||  ||||||||||||||||  | |||||| | | |||| |||||| ||||||||| ||||| | ||||||     
T  25147206 tgttcgagaagtgcgccaaagtccatacctataaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaa 25147107  T
Q  220 taagt 224  Q
    |||||    
T  25147106 taagt 25147102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 38651590 - 38651523
Alignment:
Q  110 tcctcggaatgaggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatat 177  Q
    ||||||||| ||| | ||||||| | || ||||| |||||||||||||||||||| ||||| ||||||    
T  38651590 tcctcggaacgagatgtctgaagtgagcaaaaactcatccctgcaaacacaaagagacaaatttatat 38651523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 42705525 - 42705607
Alignment:
Q  129 gaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacatt 209  Q
    |||| ||||||||  | |||||||||||||||||||| |||  | |||||| |||||||| |||||| ||||||||| |||||    
T  42705525 gaagtgcgccaaagtcaatccctgcaaacacaaagaatcaaatatttatatcagcacaagaattatacaaacaactaaacatt 42705607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 274191 - 274339
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| || | |||||||||||||  ||||||||||| || |||| || || |  |||||| || | ||||||||||||    
T  274191 ctgtagtgtccaggattagaaaagccccttggaggtttccattgactcacaagcggggaaacagcagggacgtaggcatcatcatcaatcctcggaatga 274290  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaa 170  Q
     |||   |||| ||||||||  |||||||| ||||||||||||||||||    
T  274291 tgttcgagaagtgcgccaaagtccatccctacaaacacaaagaaacaaa 274339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 17264 - 17462
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| ||||||||| |||| |||||||||||||  ||||||||||| ||  | | ||| | | ||||||| || | | ||||||||||    
T  17264 ctgtagtgtccaggattagaaaagcccctgggaggtttccattgactcacaagcggggaaactgtagggttgtagtcatcatcatcaattctcggaatga 17363  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatcca 218  Q
     |||   |||| | ||||||  ||||||||||||||||||||||||||  | |||||| ||| |||| |||||| ||| ||||| ||||| | ||||||    
T  17364 tgttcgagaagtgtgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcagcgcaagaattatacaaagaactaaacatttacgatcca 17462  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 2029553 - 2029468
Alignment:
Q  126 tctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaattatattag--cacaagtattatataaacaactatacatt 209  Q
    ||||||| | || |||||||||||||||||||||||||| ||||| |||||| ||  ||||||||| ||| ||| |||||||||||    
T  2029553 tctgaagtgagctaaaacccatccctgcaaacacaaagagacaaatttatatcagcacacaagtatcatacaaaaaactatacatt 2029468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 35014309 - 35014105
Alignment:
Q  22 ctgtggtgtccaggatcagaaaagccactggaaggtttccattgatccacaagcggggcaagagcaaggtcgcactcatcattatgattcctcggaatga 121  Q
    |||| ||||||||||| || |||||| || | |||||||||||||  ||||||||||  || || | ||||| |  |||||| || | ||||||||||||    
T  35014309 ctgtagtgtccaggattagtaaagccccttggaggtttccattgactcacaagcgggaaaacagtagggtcgtaggcatcatcatcaatcctcggaatga 35014210  T
Q  122 ggtttctgaagcgcgccaaaacccatccctgcaaacacaaagaaacaa--aattatattagcacaagtattatataaacaactatacattaaagatccac 219  Q
     |||   |||| | ||||||   ||||| |||||||||||| ||||||  | |||||| | | |||| |||||| ||||||||| ||||| | ||||||     
T  35014209 tgttcgagaagtgtgccaaagttcatccatgcaaacacaaaaaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaa 35014110  T
Q  220 taagt 224  Q
    |||||    
T  35014109 taagt 35014105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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