View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_low_17 (Length: 233)
Name: NF6903_low_17
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 9765838 - 9765637
Alignment:
| Q |
17 |
ctgctcccagtttgttgattctttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacct |
116 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765838 |
ctgctcccagtttgttgattctttgtcttgcaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacct |
9765739 |
T |
|
| Q |
117 |
gtcataaatcagttacttagagttattagaggttactttgagaaactgtcataaatcataaaagtgtgcaatttggattaacaattcatgatggtacaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765738 |
gtcataaatcagttacttagagttattagaggttactttgagaaactgtcataaatcataaaagtgtgcaatttggattaacaattcatgatggtacaaa |
9765639 |
T |
|
| Q |
217 |
at |
218 |
Q |
| |
|
|| |
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|
| T |
9765638 |
at |
9765637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 22157944 - 22158013
Alignment:
| Q |
73 |
tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat |
142 |
Q |
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||||||||||||| |||||||| | ||||||||||||| || ||| |||| || |||||||| ||||||| |
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|
| T |
22157944 |
tcctcaattctcattagcaattagaaaatatagatagaaaaactgccatacattagttactttgagttat |
22158013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 6077790 - 6077737
Alignment:
| Q |
49 |
aagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaata |
102 |
Q |
| |
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|||||||||| ||||| || ||||||||||||||||| | ||||||| |||||| |
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|
| T |
6077790 |
aagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaata |
6077737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 43651672 - 43651873
Alignment:
| Q |
17 |
ctgctcccagtttgttgattctttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacct |
116 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
43651672 |
ctgctcccattttcttgattctttgtcttgaaaagaaaaacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacct |
43651771 |
T |
|
| Q |
117 |
gtcataaatcagttacttagagttattagaggttactttgagaaactgtcataaatcataaaagtgtgcaatttggattaacaattcatgatggtacaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43651772 |
gtcataaatcagttacttagagttattagaagttactttgagaaactgtcataaataataaaagtgtgcaatttggattaacaattcatgatggtacaaa |
43651871 |
T |
|
| Q |
217 |
at |
218 |
Q |
| |
|
|| |
|
|
| T |
43651872 |
at |
43651873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 21114881 - 21115082
Alignment:
| Q |
17 |
ctgctcccagtttgttgattctttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacct |
116 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
21114881 |
ctgctcccattttcttgattctttgtcttgaaaagaaaaacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacct |
21114980 |
T |
|
| Q |
117 |
gtcataaatcagttacttagagttattagaggttactttgagaaactgtcataaatcataaaagtgtgcaatttggattaacaattcatgatggtacaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21114981 |
atcataaatcagttacttagagttattagaagttactttgagaaactgtcataaataataaaagtgtgcaatttggattaacaattcatgatggtacaaa |
21115080 |
T |
|
| Q |
217 |
at |
218 |
Q |
| |
|
|| |
|
|
| T |
21115081 |
at |
21115082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 24863708 - 24863828
Alignment:
| Q |
31 |
ttgattctttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatc--ag |
128 |
Q |
| |
|
|||||||||| ||||||||| || || ||||||| |||||||||||||| ||| ||||||||| || |||||||||||||| |||||||||||| || |
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|
| T |
24863708 |
ttgattctttatcttgaaaaaaataaa--tagaattattcaatcctcaattgtcattagcaattgacagatatagatagagaaactgtcataaatcaaag |
24863805 |
T |
|
| Q |
129 |
ttacttagagttattagaggtta |
151 |
Q |
| |
|
|||||| ||||||||||| |||| |
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|
| T |
24863806 |
ttactttgagttattagaagtta |
24863828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 51862087 - 51862000
Alignment:
| Q |
55 |
aacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat |
142 |
Q |
| |
|
|||| |||||| | ||| ||||||||||||| ||||| || ||||||||||||||| || ||| |||| ||||||||||| ||||||| |
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|
| T |
51862087 |
aacaatagaatcgctcattcctcaattctcattagcatttagcaaatatagatagaaaaactgccatagatcagttactttgagttat |
51862000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 7807621 - 7807689
Alignment:
| Q |
38 |
tttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatataga |
106 |
Q |
| |
|
|||||||||| |||||||||| ||| | | ||||||||||||||| | ||||||| |||||||||||| |
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|
| T |
7807621 |
tttgtcttgagaagaaaaacaatagtaccgctcaatcctcaattcttattagcaatcggcaaatataga |
7807689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 9333003 - 9333072
Alignment:
| Q |
73 |
tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat |
142 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| | ||| |||| ||||||||||| ||||||| |
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|
| T |
9333003 |
tcctcaattctcattagcaattagcaaatatagatagaataactgccatagatcagttactttgagttat |
9333072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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