View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_low_18 (Length: 229)
Name: NF6903_low_18
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43992463 - 43992235
Alignment:
| Q |
1 |
tgatgggaaatgacaagtgataccggcaataatatgatacatttagaaaagtgattacatttaaaacttgattttgttgtgatttcatttcgattacatt |
100 |
Q |
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| T |
43992463 |
tgatgggaaatgacaagtgataccggcaataatatgatacatttagaaaagtgattacatttaaaacttgattttgttgtgatttcatttcgattacatt |
43992364 |
T |
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| Q |
101 |
tagtgcttattttgacatgaaatgacaaagttgattatgattattaagtttgaatttccctctaattttgcgtgtttttcctgtttttgagtatttatgt |
200 |
Q |
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| T |
43992363 |
tagtgcttattttgacatgaaatgacaaagttgattatgattattaagtttgaatttccctctaattttgcgtgtttttcctgtttttgagtatttatgt |
43992264 |
T |
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| Q |
201 |
tgtactacatgaattttagtcttcataat |
229 |
Q |
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| T |
43992263 |
tgtactacatgaattttagtcttcataat |
43992235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 45463663 - 45463724
Alignment:
| Q |
54 |
attacatttaaaacttgattttgttgtgatttcatttcgattacatttagtgcttattttga |
115 |
Q |
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| T |
45463663 |
attacatttagaacttgattttgttgggatgtcatttagattacatttagagcttattttga |
45463724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 20798117 - 20797974
Alignment:
| Q |
54 |
attacatttaaaacttgattttgttgtgatttcatttcgattacatttagtgcttattttgacatgaaatgacaaagttgattatgattattaagtttga |
153 |
Q |
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| T |
20798117 |
attacatttagaacttgattttgttgtgatttcagttgttttacatttagatcttattttgatgggaaatgac--agttgattatgtttattaagtttga |
20798020 |
T |
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| Q |
154 |
atttccctctaattttgcgtgtttttcctgtttttgagtatttatgt |
200 |
Q |
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| T |
20798019 |
ttttccctttaattttgtgtattttt-ctgtttttgagtttttatgt |
20797974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 44864693 - 44864549
Alignment:
| Q |
53 |
gattacatttaaaacttgattttgttgtgatttcatttcgattacatttagtgcttattttgacatgaaatgacaaagttgattatgattattaagtttg |
152 |
Q |
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| T |
44864693 |
gattacattttgaacttgattttgatgggatgtcattttgattacatttagaacttattttggtgggaattgacaaagttaattataa--attaagtatg |
44864596 |
T |
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| Q |
153 |
aatttccctctaattttgcgtgtttttcctgtttttgagtatttatgt |
200 |
Q |
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| T |
44864595 |
actgtccctttaattttgtgtatattt-ctatttttgagtatttatgt |
44864549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 16623102 - 16623038
Alignment:
| Q |
85 |
tcatttcgattacatttagtgcttattttgacatgaaatgacaaagttgattatgattattaagt |
149 |
Q |
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| T |
16623102 |
tcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagt |
16623038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 104767 - 104852
Alignment:
| Q |
54 |
attacatttaaaacttgattttgttgtgatttcatttcgattacatttagtgctt-attttgacatgaaatgacaaagttgattat |
138 |
Q |
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| T |
104767 |
attacttttagaacttgattttgctggaatgtcattttgattacatttagaacttgattctgataggaaatgacaaagttgattat |
104852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 26029534 - 26029582
Alignment:
| Q |
119 |
gaaatgacaaagttgattatgattattaagtttgaatttccctctaatt |
167 |
Q |
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| T |
26029534 |
gaaatgacaaagttgattataattattaagtatgactgtccctttaatt |
26029582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 6394752 - 6394836
Alignment:
| Q |
52 |
tgattacatttaaaacttgattttgttgtgatttcatttcgattacatttagtgcttattttgacatgaaatgacaaagttgatt |
136 |
Q |
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| T |
6394752 |
tgattacattttgaacttgattttgatgggatgtcattttgattatattcaaagcttattttgatgggaaattacaaagttgatt |
6394836 |
T |
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