View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_low_3 (Length: 601)
Name: NF6903_low_3
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 21 - 583
Target Start/End: Complemental strand, 36357427 - 36356869
Alignment:
| Q |
21 |
cagttggtataatgtcaagctcttttaattcaattatatttatctaaaatttggtacaattatacctgtcacattgaagtttatgtaacatttcttcaag |
120 |
Q |
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| T |
36357427 |
cagttggtataatgtcaagctcttttaattcaattatatttatctaaaatttggtacaattatacctgtcacattgaagtttatgtaacatttcttcaag |
36357328 |
T |
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| Q |
121 |
tatttatatgtgtcatgatttttcatctggatttcatgcatatatataccttatacatgtctataacaataagattacatcacaaatttattagtcactt |
220 |
Q |
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| T |
36357327 |
tatttatatgtgtcatgatttttcatctggatttcatgcatata----ccttatacatgtctataacaataagattacatcacaaatttattagtcactt |
36357232 |
T |
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| Q |
221 |
tggcaatgttgattccagggtccaaatatcagcatgggattgcagttacaacatcacacagacactgtttcccaaattgctaagaaacttggatatgaca |
320 |
Q |
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| T |
36357231 |
tggcaatgttgattccagggtccaaatatcagcatgggattgcagttacaacatcacacagacattgtttcccaaattgctaagaaacttggatatgaca |
36357132 |
T |
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| Q |
321 |
aagtgcaacaacaccttaataagtgtttgtattatgtgaatataggcagcaatgatttccttaacaattacttcctgccacaacattatccaactaaagg |
420 |
Q |
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| T |
36357131 |
aagtgcaacaacaccttaacaagtgtttgtattatgtgaatataggcagcaatgatttccttaacaattacttcctgccacaacattatccaactaaagg |
36357032 |
T |
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| Q |
421 |
aaagtacactactgatcagtatgctgcagctcttgtccaagaattatcaacttatttaaaggtgtttactagttgcatttttagcatagacccaattaac |
520 |
Q |
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| T |
36357031 |
aaagtacactactgatcagtatgctgcagctcttgtccaagaattatcaacttatttaaaggtgtttactagttgcatttttagcatagacccaattaac |
36356932 |
T |
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| Q |
521 |
gaaatgttactgactaggcttaaatggtcaaatttatggatacatctttcaaaccccctaaat |
583 |
Q |
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| T |
36356931 |
gaaatgttactgactaggcttaaatggtcaaatttatggatacatctttcaaaccccctaaat |
36356869 |
T |
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