View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_low_4 (Length: 513)
Name: NF6903_low_4
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 25175796 - 25176287
Alignment:
| Q |
19 |
cctttcatcctaataaaaagtctgtattcatcataggtcattgctgagtacaaagctggcctttcctttgtcacaagctccttagcaggttcaattagca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25175796 |
cctttcatcctaataaaaagtctgtattcatcataggtcattgctgagtacaaagctggcctttcctttgtcacaagctccttagcaggttcaattagca |
25175895 |
T |
|
| Q |
119 |
aatcactctttggattgtaaaacatggccaaggaaacacgatcttttattgagttcacaatcaccctatgttccacactcttgtatattgcattgctcag |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25175896 |
aatcactctttggattgtaaaacatggccaaagaaacacgatcttttattgagttcacaatcaccctatgttccacactcttgtatattgcattgctcag |
25175995 |
T |
|
| Q |
219 |
cacctaaaacatataatcatcacataaaatatttattaattaccatcaaccactaattgttgaaatc----ttaacatcacaataatattaatttgactn |
314 |
Q |
| |
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|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
25175996 |
cacctaaaac--ataaacatcatataaaatatttattaattaccatcaaccactaattgttgaactcttagttaacatcacaataatattaatttgacta |
25176093 |
T |
|
| Q |
315 |
nnnnnnnnnngaatagtcattgtgcaccattttaaaatggtgtatattgcaatcattttattggtataacctctcatttgtttatgctaagttaatggct |
414 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25176094 |
aaaaaac----aatagtcattttgcaccattttaaaatggtgtatgttgcaatcattttattggtataacttctcatttgtttatgctaagttaatggct |
25176189 |
T |
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| Q |
415 |
atag-nnnnnnnnncgtgaggaatgtaatggctatagtatatggtctggtgtatcaatgtagatttagattttatggaccatacacctcacatttaaa |
511 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25176190 |
atagttttttttttcgtgaggaatgtaatggctatagtatatggtctggtgtatcaatgtagatttagattttatggaccatacacctcacatttaaa |
25176287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 4782079 - 4781881
Alignment:
| Q |
26 |
tcctaataaaaagtctgtattcatcataggtcattgctgagtacaaagctggcctttcctttgtcacaagctccttagcaggttcaattagcaaatcact |
125 |
Q |
| |
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||||||| ||||||| ||||||||| | ||||||| || ||| | |||||||| ||||| || | ||| ||||||||||||| |||||| |||||||| |
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| T |
4782079 |
tcctaatgtaaagtctatattcatcaaatgtcattggtgggtagagtgctggcctatccttagtgataagttccttagcaggttgaattagtaaatcact |
4781980 |
T |
|
| Q |
126 |
ctttggattgtaaaacatggccaaggaaacacgatcttttattgagttcacaatcaccctatgttccacactcttgtatattgcattgctcagcaccta |
224 |
Q |
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||||||| ||||| | |||||| ||||| | |||||| | ||||||||||| || || ||||| | || ||||||||||||||||| | |||||| |
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| T |
4781979 |
tcttggattataaaagaaggccaatgaaactctatctttgttggagttcacaattactctgtgttctatgcttttgtatattgcattgcttaacaccta |
4781881 |
T |
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