View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6903_low_5 (Length: 504)
Name: NF6903_low_5
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 34 - 490
Target Start/End: Original strand, 34375169 - 34375625
Alignment:
| Q |
34 |
ctctctcgaacataaagttaaaggtgggtgatttaatacacatactagtcaaacaaaattatagtgactattttacttaaatatgtattttatacaatta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34375169 |
ctctctcgaacataaagttaaaggtgggtgatttaatacacatactagtcaaacaaaattatagtgactattttacttagatatgtattttatacaatta |
34375268 |
T |
|
| Q |
134 |
gtgaatagcacactataaattgcataattagcaaaatgatttatcttaattttgtaggatgaatgtatggatgatcaagaaagtattagatgtcatctac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34375269 |
gtgaatagcacactataaattgcataattagcaaaatgatttatcttaattttgtaggatgaatgtatggatgatcaagaaagtattagatgtcatctac |
34375368 |
T |
|
| Q |
234 |
tcatggatgattccttgtttccaaacttaacttctttgctcatagaagcttgcaacaaaattagcatcttaatctctcattcatctttggggagtcttga |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34375369 |
tcatggatgattccttgtttccaaacttaacttctttgctcatagaagcttgcaacaaaattagcatcttaatctctcattcatctttggggagtcttga |
34375468 |
T |
|
| Q |
334 |
gcatcttgaaaagctagaagtacgaaattgcaagaacatgcaagaaatagtatctctagaagaaagttcaaataagattgtgttacataggttgaaacat |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34375469 |
gcatcttgaaaagctagaagtacgaaattgcaagaacatgcaagaaatagcatctctagaagaaagttcaaataagattgtgttacataggttgaaacat |
34375568 |
T |
|
| Q |
434 |
ctaattcttcaggagctacccaaccttaaagccttttgcctaagttcctgtgatgtc |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34375569 |
ctaattcttcaggagctacccaaccttaaagccttttgcctaagttcatgtgatgtc |
34375625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 257 - 388
Target Start/End: Complemental strand, 34289155 - 34289024
Alignment:
| Q |
257 |
aacttaacttctttgctcatagaagcttgcaacaaaattagcatcttaatctctcattcatctttggggagtcttgagcatcttgaaaagctagaagtac |
356 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| | |||||| ||||||||||| | || | ||||||||| ||||| | |||||||||||| |
|
|
| T |
34289155 |
aacttaacttctttgctcatagaagaatgtaacaaaatcaacatcttgttctctcattcaaccatgagtagtcttgagaatcttcagaagctagaagtat |
34289056 |
T |
|
| Q |
357 |
gaaattgcaagaacatgcaagaaatagtatct |
388 |
Q |
| |
|
|| | || || |||||| |||||||| ||||| |
|
|
| T |
34289055 |
gacaatgtaaaaacatggaagaaataatatct |
34289024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 15892799 - 15892662
Alignment:
| Q |
221 |
agatgtcatctactcatggatgattccttgtttccaaacttaacttctttgctcatagaagcttgcaacaaaattagcatcttaatctctcattcatctt |
320 |
Q |
| |
|
|||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||| | || |||||| | | ||| || ||||||||||| |
|
|
| T |
15892799 |
agatgtcacccactcatagatgatgccttgtttccaaacttaacttctttgctcatagaaacatgtaacaaagtcaacatattgttctctcattcaatca |
15892700 |
T |
|
| Q |
321 |
tggggagtcttgagcatcttgaaaagctagaagtacga |
358 |
Q |
| |
|
|| | ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15892699 |
tgtgtagtcttgagcatcttcaaaagctcgaagtacga |
15892662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University