View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6903_low_6 (Length: 480)
Name: NF6903_low_6
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6903_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 27442416 - 27441973
Alignment:
| Q |
18 |
catcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactatt |
117 |
Q |
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| T |
27442416 |
catcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactatt |
27442317 |
T |
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| Q |
118 |
gcagaattggcaagacaatgctgtgaaaaggagcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagc |
217 |
Q |
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| T |
27442316 |
gcagaattggcaagacactgctgtgaaaaggagcctaataagcgtcccgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagc |
27442217 |
T |
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| Q |
218 |
cggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcat |
317 |
Q |
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| T |
27442216 |
cggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcat |
27442117 |
T |
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| Q |
318 |
attagaggataccattcaggaatattaggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaat |
417 |
Q |
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| T |
27442116 |
attagaggataccattcaggaaaattaggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaat |
27442017 |
T |
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| Q |
418 |
tcattttgatgattttccctgaatattattttgatgctcataag |
461 |
Q |
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| T |
27442016 |
tcattttgatgattttccctgaatattattttgatgctcataag |
27441973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 49 - 313
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
49 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
148 |
Q |
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||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
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| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
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| Q |
149 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
248 |
Q |
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| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
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| Q |
249 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
313 |
Q |
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| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 55 - 313
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
55 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
154 |
Q |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
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| Q |
155 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
254 |
Q |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
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| Q |
255 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
313 |
Q |
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| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 49 - 313
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
49 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
148 |
Q |
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| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
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| Q |
149 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
248 |
Q |
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| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
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| Q |
249 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
313 |
Q |
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| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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