View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6903_low_9 (Length: 381)

Name: NF6903_low_9
Description: NF6903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6903_low_9
NF6903_low_9
[»] chr4 (3 HSPs)
chr4 (1-315)||(55730806-55731134)
chr4 (1-51)||(23749780-23749830)
chr4 (1-51)||(54679115-54679165)
[»] chr8 (1 HSPs)
chr8 (1-51)||(23264477-23264527)
[»] chr7 (3 HSPs)
chr7 (1-51)||(35954763-35954813)
chr7 (52-121)||(28741333-28741402)
chr7 (1-50)||(48237687-48237736)
[»] chr6 (2 HSPs)
chr6 (1-51)||(21624348-21624398)
chr6 (52-133)||(32797575-32797656)
[»] chr3 (2 HSPs)
chr3 (1-51)||(1241924-1241974)
chr3 (1-43)||(33582485-33582527)
[»] chr2 (1 HSPs)
chr2 (1-51)||(45087791-45087841)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 55731134 - 55730806
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttagcataaacttttcaacaacaaaactaaatcaattacgcagctggtggaca 100  Q
    ||||||||||| || |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55731134 tcacttcagaagtagaaatctatctactttttatcagtattttcagcttagcataaacttttcaacaacaaaactaaatcaattacgcagctggtggaca 55731035  T
Q  101 aagtaaaagtttattctttttggttgttgaaaggtaatattgctagctttctttttgtccatcatatgtggtggcaacaatcatttgtttgcttaggtat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55731034 aagtaaaagtttattctttttggttgttgaaaggtaatattgctagctttctttttgtccatcatatgtggtggcaacaaccatttgtttgcttaggtat 55730935  T
Q  201 caattgatttg-------------tttgaggatgttgttgttctaatactgctttgctctttttacacaccttatattaaggagcatta-nnnnnnnnct 286  Q
    |||||||||||             |||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||         ||    
T  55730934 caattgatttgtttttctattttatttgaggatgttgttgttgtaatactgctttgctctttttacaaaccttatatttaggagcattatttttttttct 55730835  T
Q  287 ggttgtaatatattttatttttacttgtt 315  Q
     ||||||||||||||||||||||||||||    
T  55730834 agttgtaatatattttatttttacttgtt 55730806  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23749830 - 23749780
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| || || ||||||||||| ||||||||||||| |||||||    
T  23749830 tcacttcagaagtagaactctatctacttctgatcagtgttttcagcttag 23749780  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54679165 - 54679115
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| || || ||||||| ||||||||||||||||| |||||||    
T  54679165 tcacttcagaagtagaactctatctgcttttgatcagtgttttcagcttag 54679115  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23264477 - 23264527
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| || || ||||||||||| ||||||||||||| |||||||    
T  23264477 tcacttcagaagtagaattctatctacttctgatcagtgttttcagcttag 23264527  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35954763 - 35954813
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||    
T  35954763 tcacttcagaagtaaaactctatctgcttctgatcagtgttttcagcttag 35954813  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 28741333 - 28741402
Alignment:
Q  52 cataaacttttcaacaacaaaactaaatcaattacgcagctggtggacaaagtaaaagtttattcttttt 121  Q
    |||||||||||||| ||||||   ||||| ||||||||| || |||| ||||||||||||| ||| ||||    
T  28741333 cataaacttttcaaaaacaaagtcaaatcgattacgcagttgctggaaaaagtaaaagtttcttcatttt 28741402  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48237687 - 48237736
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagctta 50  Q
    ||||||||||| || || ||||||||||| ||||||||||||| ||||||    
T  48237687 tcacttcagaagtagaactctatctacttctgatcagtgttttcagctta 48237736  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21624398 - 21624348
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||    
T  21624398 tcacttcagaagtaaaactctatctgcttctgatcagtgttttcagcttag 21624348  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 32797575 - 32797656
Alignment:
Q  52 cataaacttttcaacaacaaaactaaatcaattacgcagctggtggacaaagtaaaagtttattctttttggttgttgaaag 133  Q
    |||| |||||| ||||||||| || |||| |||| ||| ||| | |||||||||||| | | ||||||||||| ||||||||    
T  32797575 catagactttttaacaacaaagcttaatccattatgcaactgttagacaaagtaaaaatatcttctttttggtggttgaaag 32797656  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1241924 - 1241974
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| || |||||||||| ||| ||||||||||||| |||||||    
T  1241924 tcacttcagaagtagaaatctatctgcttctgatcagtgttttcagcttag 1241974  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33582527 - 33582485
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttt 43  Q
    |||||||||||||| |||||||||||||| | |||||||||||    
T  33582527 tcacttcagaattagaaatctatctacttcttatcagtgtttt 33582485  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45087791 - 45087841
Alignment:
Q  1 tcacttcagaattaaaaatctatctacttttgatcagtgtttttagcttag 51  Q
    ||||||||||| || |||||||||| ||| ||||||||||||| |||||||    
T  45087791 tcacttcagaagtataaatctatctgcttctgatcagtgttttcagcttag 45087841  T

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