View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6904_high_2 (Length: 451)
Name: NF6904_high_2
Description: NF6904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6904_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 546051 - 545607
Alignment:
| Q |
7 |
tcgaagaatattgtgatgcaagtcgggatttgtatgcggtgcagttggttttatgcaatgctgtgaaattaaaattattttaaactctggtttgattgta |
106 |
Q |
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| T |
546051 |
tcgaataatattgtgatgcaagtcgggatttgtatgcggtgcagttggttttatgcaatgctgtgaaattaaaattattttaaactctggtttgattgta |
545952 |
T |
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| Q |
107 |
ggattgattgaatgattttgatgcaactatatggtgatgatgttaaatgcaaacttttaattttgatcaatatttgcagcggttccatattttcatgctt |
206 |
Q |
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| T |
545951 |
ggattgattgaatgattttgatgcaactatatggtgatgatgttaaatgcaaacttttaattttgatcaatatttgcagcggttccatattttcatgctt |
545852 |
T |
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| Q |
207 |
ttaaaagttgtgcatttaatatgatgagatcaatgaagagatctgtttttatggagatctctatcttggaatttgtttggttttccaatcacaacaacat |
306 |
Q |
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| T |
545851 |
ttaaaagttgtgcatttaatatgatgagatcaatgaagagatctgtttttatggagatctctatcttggaatttgtttggttttccaatcacaacaacat |
545752 |
T |
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| Q |
307 |
tgataacaatacttctagttctatatttttatctgttagagtttggacagatactttaaccttcaatgttgctctttttggagaaagttaacacagtcca |
406 |
Q |
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| T |
545751 |
tgataacaatacttctagttctatatttttatctgttagagtttggacagatactttaaccttcaatgttgctctttttggagaaagttaacacagtcca |
545652 |
T |
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| Q |
407 |
aagtttttattaaggagtttgatgtatttttatctaattatttga |
451 |
Q |
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| T |
545651 |
aagtttttattaaggagtttgatgtatttttatctaattatttga |
545607 |
T |
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