View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6904_high_3 (Length: 248)
Name: NF6904_high_3
Description: NF6904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6904_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 39729125 - 39729375
Alignment:
| Q |
5 |
gaaacaaagagcaataatgaatacgtaatcaacccttacatactcatatgtacgtacgtgagtaaatcgaaaaactagttgtgtgaaatcgagaactaat |
104 |
Q |
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| T |
39729125 |
gaaacaaagagcaataatgaatacgtaatcaacccttacatactcatatgtaggtacgtgagtaaatcgaaaaactagttgtgtgaaatcgagaactaat |
39729224 |
T |
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| Q |
105 |
aatagatggaataatttannnnnnnnnctttctaaaaatg------aaatttaaattgatttcaaattggagttttgttaatcaaacatgatgttttga- |
197 |
Q |
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| T |
39729225 |
aatggatggaataatat-tttttttttctttctaaaaatgaaatttaaatttaaattgatttcaaattggagttttgttaatcaaacatgatgttttgat |
39729323 |
T |
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| Q |
198 |
-ttttannnnnnnnggtacaagatattttgatttctttaacttgacaaaatt |
248 |
Q |
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| T |
39729324 |
ttttttttttttttggtacaagatattttgatttctttaacttgacaaaatt |
39729375 |
T |
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