View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6904_low_1 (Length: 454)
Name: NF6904_low_1
Description: NF6904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6904_low_1 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 12641042 - 12640583
Alignment:
| Q |
1 |
caaaagttgatagaatgaggaaaatttggatcaacgaacgaactcgaa------ttcttgtcagaatatgagcgctttattcttagggattctatgaggg |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12641042 |
caaaagttgatagaatgaggaaaatttggatcaacgaacgaactcgaactcgaattcttgtcagaatatgagcgctttattcttaaggattctatgaggg |
12640943 |
T |
|
| Q |
95 |
atactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaagggtatacacagtcggcaatgatgta |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12640942 |
atactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaagggtatacacagtcggcaatgatgta |
12640843 |
T |
|
| Q |
195 |
gtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccatggtgtcagggttagtggtggaggac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12640842 |
gtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccatggtgtcagggttagtggtggaggac |
12640743 |
T |
|
| Q |
295 |
aatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagagatttggtaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12640742 |
aatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagagatttggtaa |
12640643 |
T |
|
| Q |
395 |
agaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
12640642 |
agaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatgggatgcaaaca |
12640583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 70 - 454
Target Start/End: Original strand, 48958840 - 48959224
Alignment:
| Q |
70 |
tttattcttagggattctatgagggatactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaag |
169 |
Q |
| |
|
|||||||| |||||||| |||||||| || ||||||||| |||| |||||||| ||||||| || ||| |||||| ||||||||||| || ||| | |
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| T |
48958840 |
tttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcataaacccagg |
48958939 |
T |
|
| Q |
170 |
ggtatacacagtcggcaatgatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccat |
269 |
Q |
| |
|
||| || ||||| || || ||| |||||||| |||||||||||| ||| || ||| |||||| ||||||||||||| || | |||||||| | |
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|
| T |
48958940 |
ggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattgccccgtagtatatcttgccgga |
48959039 |
T |
|
| Q |
270 |
ggtgtcagggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacgga |
369 |
Q |
| |
|
||||||| || | ||||||||||| |||||||||||||| || || | |||||||||||||| |||| ||| ||||||||||||||| || ||| |
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| T |
48959040 |
ggtgtcaccgtcggaggtggaggacatagattcaacgccgtcagggaggccaacttgttgggagggaaagttgacaaggtgaaggcggaggaagaaggga |
48959139 |
T |
|
| Q |
370 |
tcgacgaaggagagagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
|| || |||||||||||||||||||| |||| ||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
48959140 |
tcaacacttgagagagatttggtaaagaagtgggagttggagggagtggtgatgattgtcacttgttggccatgggatgcaaaca |
48959224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 454
Target Start/End: Original strand, 48962981 - 48963366
Alignment:
| Q |
70 |
tttattcttagggattctatgagggatactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaag |
169 |
Q |
| |
|
|||||||| |||||||| |||||||| || ||||| | | |||| |||||||||||||||| ||| ||| |||||| ||||||||| || ||| | |
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|
| T |
48962981 |
tttattctaagggattccatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccatg |
48963080 |
T |
|
| Q |
170 |
ggtatacacagtcggcaatgatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccat |
269 |
Q |
| |
|
|||||| |||||||| |||||| |||||||| |||||||||||| ||| || ||| ||| | |||||||||||||| || | |||||||||| |
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|
| T |
48963081 |
ggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga |
48963180 |
T |
|
| Q |
270 |
ggtgtcagggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacgga |
369 |
Q |
| |
|
|||| | || ||||||||||||||| |||||||| || || | || | ||||| |||||||||||||| ||| |||||||| ||||| | ||| |
|
|
| T |
48963181 |
ggtggcgatgtcagtggtggaggacaaagattcaacaccatcaaggaggctg--ttgtttggaggggaagtcgatggtatgaaggcgaaggaagagggga |
48963278 |
T |
|
| Q |
370 |
tcgacgaaggagagaga---tttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||| | ||||| |||| ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||| |||| ||||||| |
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|
| T |
48963279 |
tcggcaaaggaaggagacttattggtgaagaagtgggcgttggagggagtggtgatgattgtgacttgttggccacgggacgcaaaca |
48963366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 454
Target Start/End: Original strand, 13441111 - 13441283
Alignment:
| Q |
282 |
agtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggag |
381 |
Q |
| |
|
||||||||| |||| ||||||| ||| || || || ||||||||||||||||| |||||||||||||| | ||||||||| || | | | || | ||| |
|
|
| T |
13441111 |
agtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgag |
13441210 |
T |
|
| Q |
382 |
agagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||||||||||| | | | || ||||||||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
13441211 |
agagatttggttagggattgagcgttggagggagtggtgatgattgtgacttgttggccacgggatgcaaaca |
13441283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 454
Target Start/End: Original strand, 13449312 - 13449446
Alignment:
| Q |
320 |
cgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagagatttggtaaagaaatgggcgttggagggagtggt |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || ||||| | ||| || || | |||||||||||||||| | | | ||||||| ||||||||| |
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|
| T |
13449312 |
cgacttgttgggaggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaagggattttgcgttggcgggagtggt |
13449411 |
T |
|
| Q |
420 |
gatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||||| || |||||||||||| |||||||||||| |
|
|
| T |
13449412 |
gatgactgttacttgctggccacgggatgcaaaca |
13449446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 454
Target Start/End: Original strand, 13462296 - 13462467
Alignment:
| Q |
283 |
gtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggaga |
382 |
Q |
| |
|
|||||||| |||| ||||||| ||| || ||||| | ||||||||||||||||| |||| |||||||| ||| |||| | ||| || || | |||| |
|
|
| T |
13462296 |
gtggtggaagacatagattcaatgccatcaggaaggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgaga |
13462395 |
T |
|
| Q |
383 |
gagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
|||||||||||| | | ||| ||||||||||||||||||||| ||||| || |||||| |||||||||||| |
|
|
| T |
13462396 |
gagatttggtaagggattggacgttggagggagtggtgatgactgtgacgtgttggccacgggatgcaaaca |
13462467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 454
Target Start/End: Complemental strand, 3416803 - 3416632
Alignment:
| Q |
283 |
gtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggaga |
382 |
Q |
| |
|
||||||||||| | ||||||| ||| || || || || | |||||| |||| |||||||||||||||||||||||||| || ||| || | | || | |
|
|
| T |
3416803 |
gtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaagggaaagtcgacggtgtgaaggcggaggaagaagggagcggcataagaaa |
3416704 |
T |
|
| Q |
383 |
gagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||||||| |||| || | ||| |||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
3416703 |
gagattttgtaagaaatttggcattggagggagtggtgatgattgtgacatgttggccatgggatgcaaaca |
3416632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 358
Target Start/End: Complemental strand, 12589631 - 12589370
Alignment:
| Q |
97 |
actgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaagggtatacacagtcggcaatgatgtagt |
196 |
Q |
| |
|
|||||||||||| |||| ||||||||| | | ||| ||| ||| |||||| ||||| ||||| || || ||||||| || |||||||||||||||| |
|
|
| T |
12589631 |
actgtaaagagggagaaaacggtgaaggcgaggatggggatttgaagcttatgggccatgtcataaacccctgggtatatgcaatcggcaatgatgtagt |
12589532 |
T |
|
| Q |
197 |
caggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccatggtgtcagggttagtggtggaggacaa |
296 |
Q |
| |
|
||||| ||||||||| || || || | |||||||||| |||||||| |||| || || | |||||| |||| | ||| |||||||||||||| |
|
|
| T |
12589531 |
caggtggatccttctgcatcaaatccccaatgggttcaaggaggagctttgcggctgtatagatcttgatggaggtggcgtggtcggtggtggaggacaa |
12589432 |
T |
|
| Q |
297 |
tgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcgga |
358 |
Q |
| |
|
||||| || ||||| || || |||||||| |||||||||| || ||| |||||||||||| |
|
|
| T |
12589431 |
agattcgacaccgtcagggaggccgacttgtagggaggggaaatctacgatgtgaaggcgga |
12589370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 12482623 - 12482557
Alignment:
| Q |
388 |
ttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||||| ||||| |||| |||||| |||||||||||||| ||||| || |||||| | |||||||||| |
|
|
| T |
12482623 |
ttggtgaagaagtgggtgttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaaca |
12482557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 12589355 - 12589289
Alignment:
| Q |
388 |
ttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||||| ||||| |||| ||| ||||||||||| |||| |||||||| |||||| |||||||||||| |
|
|
| T |
12589355 |
ttggtgaagaagtgggagttcaagggagtggtggtgattgtgacttgttggccacgggatgcaaaca |
12589289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 12541708 - 12541756
Alignment:
| Q |
406 |
ttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
12541708 |
ttggagggagtggtgatgattgtgacttgttggccatgtgatgcaaaca |
12541756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 354
Target Start/End: Original strand, 12541591 - 12541668
Alignment:
| Q |
277 |
gggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaagg |
354 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| | || || |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
12541591 |
gggtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagg |
12541668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 454
Target Start/End: Original strand, 28386336 - 28386411
Alignment:
| Q |
379 |
gagagagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgctggccatgggatgcaaaca |
454 |
Q |
| |
|
||||||| ||| |||| | | ||||| |||||||||||||||||||| ||||| || |||||| | |||||||||| |
|
|
| T |
28386336 |
gagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaaca |
28386411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 28386242 - 28386326
Alignment:
| Q |
276 |
agggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggagg |
360 |
Q |
| |
|
||||| ||||||||||| || || |||||||| | || || ||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
28386242 |
agggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagg |
28386326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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