View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6905_high_3 (Length: 422)
Name: NF6905_high_3
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6905_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 4869324 - 4868922
Alignment:
| Q |
3 |
tcatattgcagaaataagtttagatttgatgataaatttattaatttgtattatcctgtcaacatgctcaattgctcatatttagtgtctctatgattgg |
102 |
Q |
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| T |
4869324 |
tcatattgcagaaataagtttagatttgatgataaatttattaatttgtattatcctgtcaacatgctcaattgctcatatctagtgtctctatgattgg |
4869225 |
T |
|
| Q |
103 |
taatttctccaatgcttctggctcttcctccttcatgaagttcaacatttaaagttatttagaaagtcgttttgattaagaaaattattttgacatcgat |
202 |
Q |
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| T |
4869224 |
taatttctccaatgcttctggctcttcctccttcatgaagttcaacatttaaagttatttagaaagtcgttttgattaaggaaattattttgacatcgat |
4869125 |
T |
|
| Q |
203 |
ccttccattgaccgttagatcaaatgcaatgttgtaggtgcaactatagaggttcgtacgtctcatgccaaattgaggtatttcatcatttctcattgtg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4869124 |
ccttccattgaccgttagatcaaatgcaatgttgtaggtgtaac--tagaggtt----cgtctcatgccaaattgaggtatttcatcatttctcattgtg |
4869031 |
T |
|
| Q |
303 |
acaatatcattgtttcattgggttttcaaaccattggcatgcagtcgcggaat--------tctcttcctcgtaatgtttatggatctttcattagcaat |
394 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4869030 |
acgatatcattgtttcattgggttttcaaaccattggcatgcagtcgcggaattctcttcctctcttcctcgtaatgtttatggatctttcattaacaat |
4868931 |
T |
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| Q |
395 |
tggtcgggt |
403 |
Q |
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| T |
4868930 |
tggtcgggt |
4868922 |
T |
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