View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6905_low_2 (Length: 564)
Name: NF6905_low_2
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6905_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 17455009 - 17455560
Alignment:
| Q |
1 |
gtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttaatttttcatttctatatgtacttatgcatgcattaccaaat |
100 |
Q |
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| T |
17455009 |
gtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttattttttcatttctatatgtacttttgcatgcattaccaaat |
17455108 |
T |
|
| Q |
101 |
gannnnnnnnnnn-aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccac |
199 |
Q |
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| T |
17455109 |
gatttattttttttaggggacattggaagcagctctgcaggttcaaaccttgaagacgatgaaattgatgctgaaatgtacattcaaccgggaaatccac |
17455208 |
T |
|
| Q |
200 |
acttcattgcaaaacatagtctttatagacccaatgaattggtataattctttatatcgattctttattaatctctttatttattttttatcatacgcaa |
299 |
Q |
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| T |
17455209 |
acttcattgcaaaacatagtctttatagacccaatgaattggtataattctttatatcgattctttattaatcgctttatttattttttatcatacgcaa |
17455308 |
T |
|
| Q |
300 |
aaggtttattaagtgactctccaatgtatttctctaaacatgtcgagttgttgcaatttcagttttcataatttacaactattaaatgttacttctttga |
399 |
Q |
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| T |
17455309 |
aaggtttattaagtgattctcca-tgtattgctctaaacatgtcaagttgttgcaatttcaattttcataatttacaactattaaatgttacttctttga |
17455407 |
T |
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| Q |
400 |
tgtgcttattatggattttgcagcattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaa |
499 |
Q |
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| T |
17455408 |
tgtgcttattatggattttacagcattttccgaagaatgtaattaaagatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaa |
17455507 |
T |
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| Q |
500 |
ggtatgattctaattcgtagatttggtttttcacaattatgaaatgatgtcca |
552 |
Q |
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| T |
17455508 |
ggtatgattctaattcgtagatttggtttttcacaattatgaaatgatgtcca |
17455560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 17393749 - 17393609
Alignment:
| Q |
114 |
aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaa |
213 |
Q |
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|||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
17393749 |
agggaacattgggagcagctctgcacgatcaaaacttgaagatgacgaaattgatgctgaaatatatattcaaccgggaaatcctcactttattgcaaaa |
17393650 |
T |
|
| Q |
214 |
catagtctttatagacccaatgaattggtataattctttat |
254 |
Q |
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||| || || ||||| |||||||||||| |||||||||| |
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| T |
17393649 |
tatattcattccagacctaatgaattggtaaaattctttat |
17393609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 17461363 - 17461459
Alignment:
| Q |
120 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaacat |
216 |
Q |
| |
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| T |
17461363 |
cattggaagtagctctgcagctccaaatcttgaagatgatgaaattgatgctgaaatgtatattcagccaggaaatccatacttctatgcaaaacat |
17461459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 550
Target Start/End: Complemental strand, 17393341 - 17393218
Alignment:
| Q |
427 |
ttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatttggt |
526 |
Q |
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|||| |||||||| || ||||||||||| | |||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||| ||| ||| | |
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| T |
17393341 |
ttccaaagaatgttatcaaggatttctgcctctgcttcacaaaacatgtcacccttgaatgttgccactgtaaggtataattctaatcattagcttttat |
17393242 |
T |
|
| Q |
527 |
ttttcacaattatgaaatgatgtc |
550 |
Q |
| |
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|||||||| ||||||| ||||||| |
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| T |
17393241 |
ttttcacatttatgaactgatgtc |
17393218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 17461572 - 17461661
Alignment:
| Q |
415 |
ttttgcagcattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
504 |
Q |
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| T |
17461572 |
ttttgcagaatatttcgaagaatgtcatcaaggatttctgcctttgctttacaaagcatatcaccattgtatgttgccactgcaaggtat |
17461661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 17393435 - 17393368
Alignment:
| Q |
345 |
agttgttgcaatttcagttttcataatttacaactattaaatgttacttctttgatgtgcttattatg |
412 |
Q |
| |
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| T |
17393435 |
agttgttgcaattttagttttcttaacttacgatcatttcatgttacttctttgatgtacttattatg |
17393368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 40235230 - 40235135
Alignment:
| Q |
120 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaaca |
215 |
Q |
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| T |
40235230 |
cattggaagcagctctgcagctccaaaacatgaagatgatgaaattgatgttgaaatgtatattcagccaggaaatccttacttctatgcaaaaca |
40235135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 40234861 - 40234789
Alignment:
| Q |
432 |
aagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
504 |
Q |
| |
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| T |
40234861 |
aagaatgtcgttaaggatttctgcctttgctttacaaagcatatcagccttgtatgttgccactgcaaggtat |
40234789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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